* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘hermiter’ ...
** package ‘hermiter’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpECIeDk/R.INSTALL1c7a595a230ae/hermiter/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hermite_utils.cpp -o hermite_utils.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/tbb.h:32,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel/TBB.h:10,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel.h:24,
from hermite_utils.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = long unsigned int]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here
251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id);
| ~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic<long unsigned int>&’ does not use ‘constexpr tbb::atomic<long unsigned int>::atomic(long unsigned int)’ [-Wcast-user-defined]
544 | return (atomic<T>&)t;
| ^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::hash_map_base::bucket*]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/concurrent_hash_map.h:291:31: required from here
291 | && as_atomic(my_table[new_seg]).compare_and_swap(is_allocating, NULL) == NULL )
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘tbb::interface5::internal::hash_map_base::bucket*’ to ‘tbb::atomic<tbb::interface5::internal::hash_map_base::bucket*>&’ does not use ‘constexpr tbb::atomic<T*>::atomic(T*) [with T = tbb::interface5::internal::hash_map_base::bucket]’ [-Wcast-user-defined]
544 | return (atomic<T>&)t;
| ^~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel/TinyThread.h:7,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel.h:6:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel/Common.h: In instantiation of ‘int RcppParallel::resolveValue(const char*, T, U) [with T = long unsigned int; U = int]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel.h:60:28: required from ‘void RcppParallel::parallelReduce(std::size_t, std::size_t, Reducer&, std::size_t, int) [with Reducer = HermiteS; std::size_t = long unsigned int]’
60 | grainSize = resolveValue("RCPP_PARALLEL_GRAIN_SIZE", grainSize, 1);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hermite_utils.cpp:430:17: required from here
430 | parallelReduce(0, x.length(), hermites);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel/Common.h:16:23: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
16 | if (requestedValue != defaultValue && requestedValue > 0)
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o hermiter.so RcppExports.o hermite_utils.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpECIeDk/R.INSTALL1c7a595a230ae/hermiter/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpECIeDk/R.INSTALL1c7a595a230ae/hermiter/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpECIeDk/R.INSTALL1c7a595a230ae/hermiter/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-hermiter/00new/hermiter/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘hermiter’
finding HTML links ... done
IQR html
IQR.default html
IQR.hermite_estimator_univar html
cor html
cum_prob html
cum_prob.hermite_estimator_bivar html
cum_prob.hermite_estimator_univar html
dens html
dens.hermite_estimator_bivar html
dens.hermite_estimator_univar html
density.hermite_estimator_bivar html
density.hermite_estimator_univar html
gauss_hermite_quad_100 html
hcdf html
hcdf.hermite_estimator_bivar html
hcdf.hermite_estimator_univar html
hermite_estimator html
hermite_estimator_bivar html
hermite_estimator_univar html
hermite_function html
hermite_function_N html
hermite_function_sum_N html
hermite_function_sum_serial html
hermite_int_full html
hermite_int_full_domain html
hermite_int_lower html
hermite_int_upper html
hermite_integral_val html
hermite_integral_val_upper html
hermite_normalization html
hermite_normalization_N html
hermite_polynomial html
hermite_polynomial_N html
hermiter-package html
initialize_batch_bivar html
initialize_batch_univar html
kendall html
kendall.hermite_estimator_bivar html
median.hermite_estimator_univar html
merge_hermite html
merge_hermite_bivar html
merge_hermite_univar html
merge_moments_and_count_bivar html
merge_moments_and_count_univar html
merge_pair html
merge_pair.hermite_estimator_bivar html
merge_pair.hermite_estimator_univar html
merge_standardized_helper_bivar html
merge_standardized_helper_univar html
plot.hcdf_bivar html
plot.hcdf_univar html
plot.hdensity_bivar html
plot.hdensity_univar html
print.hcdf_bivar html
print.hcdf_univar html
print.hdensity_bivar html
print.hdensity_univar html
print.hermite_estimator_bivar html
print.hermite_estimator_univar html
quant html
quant.hermite_estimator_univar html
quantile.hermite_estimator_univar html
spearmans html
spearmans.hermite_estimator_bivar html
standardizeInputs html
standardizeInputsEW html
summary.hcdf_bivar html
summary.hcdf_univar html
summary.hermite_estimator_bivar html
summary.hermite_estimator_univar html
update_sequential html
update_sequential.hermite_estimator_bivar
html
update_sequential.hermite_estimator_univar
html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hermiter)