* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘gwasrapidd’ ... ** package ‘gwasrapidd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘gwasrapidd’ finding HTML links ... done add_object_tier html allele_name html ancestral_groups_tbl html ancestries_tbl html association_to_study html association_to_trait html association_to_variant html associations-class html associations html associations_drop_na html associations_tbl html bind html child_efo_ids html contains_question_mark html countries_tbl html cytogenetic_band_to_genomic_range html cytogenetic_bands html empty_to_na html ensembl_ids_tbl html entrez_ids_tbl html equal_length html exists_variant html extract_association_id html filter_by_id html filter_variants_by_standard_chromosomes html gc_examples html gc_get html gc_request html gc_request_all html genomic_contexts_tbl html genotyping_techs_tbl html get_associations html get_associations_all html get_associations_by_association_id html get_associations_by_efo_id html get_associations_by_efo_trait html get_associations_by_pubmed_id html get_associations_by_study_id html get_associations_by_variant_id html get_child_efo html get_metadata html get_studies html get_studies_all html get_studies_by_association_id html get_studies_by_efo_id html get_studies_by_efo_trait html get_studies_by_efo_uri html get_studies_by_full_pvalue_set html get_studies_by_pubmed_id html get_studies_by_reported_trait html get_studies_by_study_id html get_studies_by_user_requested html get_studies_by_variant_id html get_traits html get_traits_all html get_traits_by_association_id html get_traits_by_efo_id html get_traits_by_efo_trait html get_traits_by_efo_uri html get_traits_by_pubmed_id html get_traits_by_study_id html get_variants html get_variants_all html get_variants_by_association_id html get_variants_by_cytogenetic_band html get_variants_by_efo_id html get_variants_by_efo_trait html get_variants_by_gene_name html get_variants_by_genomic_range html get_variants_by_pubmed_id html get_variants_by_reported_trait html get_variants_by_study_id html get_variants_by_variant_id html gwasrapidd-package html is_association_id html is_ebi_reachable html is_efo_id html is_efo_id2 html is_embedded html is_empty_str html is_human_chromosome html is_paginated html is_pubmed_id html is_rs_id html is_study_id html list_to_s4 html loci_tbl html lstjoin html metadata_lst html missing_to_na html n html normalise_obj html object_type_from_url html open_in_dbsnp html open_in_gtex html open_in_gwas_catalog html open_in_pubmed html peel_off_embedded html pipe html platforms_tbl html publications_tbl html recursive_apply html reported_genes_tbl html risk_alleles_tbl html s4_to_list html set_testing_fast html set_testing_slow html setop html skip_if_testing_is_fast html studies-class html studies html studies_drop_na html studies_tbl html study_to_association html study_to_trait html study_to_variant html subset-associations html subset-studies html subset-traits html subset-variants html sure html trait_to_association html trait_to_study html trait_to_variant html traits-class html traits html traits_drop_na html traits_tbl html tws html v_ensembl_ids_tbl html v_entrez_ids_tbl html variant_name html variant_to_association html variant_to_study html variant_to_trait html variants-class html variants html variants_drop_na html variants_tbl html write_xlsx html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gwasrapidd)