* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘git2r’ ...
** package ‘git2r’ successfully unpacked and MD5 sums checked
** using staged installation
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
Found pkg-config cflags and libs!
checking whether the libgit2 version will work in git2r... yes
----- Results of the git2r package configure -----
PKG_CFLAGS:
PKG_LIBS: -lgit2
--------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEkZ66H/R.INSTALLd96672cdddf04/git2r/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r.c -o git2r.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_S3.c -o git2r_S3.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_arg.c -o git2r_arg.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_blame.c -o git2r_blame.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_blob.c -o git2r_blob.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_branch.c -o git2r_branch.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_checkout.c -o git2r_checkout.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_clone.c -o git2r_clone.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_commit.c -o git2r_commit.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_config.c -o git2r_config.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_cred.c -o git2r_cred.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_diff.c -o git2r_diff.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_error.c -o git2r_error.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_graph.c -o git2r_graph.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_index.c -o git2r_index.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_libgit2.c -o git2r_libgit2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_merge.c -o git2r_merge.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_note.c -o git2r_note.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_object.c -o git2r_object.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_odb.c -o git2r_odb.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_oid.c -o git2r_oid.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_push.c -o git2r_push.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_reference.c -o git2r_reference.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_reflog.c -o git2r_reflog.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_remote.c -o git2r_remote.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_repository.c -o git2r_repository.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_reset.c -o git2r_reset.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_revparse.c -o git2r_revparse.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_revwalk.c -o git2r_revwalk.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_signature.c -o git2r_signature.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_stash.c -o git2r_stash.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_status.c -o git2r_status.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_tag.c -o git2r_tag.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_transfer.c -o git2r_transfer.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c git2r_tree.c -o git2r_tree.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEkZ66H/R.INSTALLd96672cdddf04/git2r/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEkZ66H/R.INSTALLd96672cdddf04/git2r/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEkZ66H/R.INSTALLd96672cdddf04/git2r/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-git2r/00new/git2r/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘git2r’
finding HTML links ... done
add html
ahead_behind html
as.data.frame.git_repository html
as.data.frame.git_tree html
as.list.git_tree html
blame html
blob_create html
branch_create html
branch_delete html
branch_get_upstream html
branch_remote_name html
branch_remote_url html
branch_rename html
branch_set_upstream html
branch_target html
branches html
bundle_r_package html
checkout html
clone html
commit html
commits html
config html
content html
contributions html
cred_env html
cred_ssh_key html
cred_token html
cred_user_pass html
default_signature html
descendant_of html
diff-methods html
discover_repository html
fetch html
fetch_heads html
git2r html
git_config_files html
git_time html
hash html
hashfile html
head.git_repository html
in_repository html
index_remove_bypath html
init html
is_bare html
is_binary html
is_blob html
is_branch html
is_commit html
is_detached html
is_empty html
is_head html
is_local html
is_merge html
is_shallow html
is_tag html
is_tree html
last_commit html
length.git_blob html
length.git_diff html
length.git_tree html
libgit2_features html
libgit2_version html
lookup html
lookup_commit html
ls_tree html
merge html
merge_base html
note_create html
note_default_ref html
note_remove html
notes html
odb_blobs html
odb_objects html
parents html
plot.git_repository html
print.git_reflog_entry html
pull html
punch_card html
push html
reexports html
REDIRECT:topic Previous alias or file overwritten by alias: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-git2r/00new/git2r/help/merge.html
references html
reflog html
remote_add html
remote_ls html
remote_remove html
remote_rename html
remote_set_url html
remote_url html
remotes html
repository html
repository_head html
reset html
revparse_single html
rm_file html
sha html
ssh_path html
ssl_cert_locations html
stash html
stash_apply html
stash_drop html
stash_list html
stash_pop html
status html
sub-.git_tree html
summary.git_repository html
summary.git_stash html
summary.git_tree html
tag html
tag_delete html
tags html
tree html
when html
workdir html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (git2r)