Install log for 'ggdmc'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ggdmc’ ...
** package ‘ggdmc’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++-14 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... g++-14 -std=gnu++17 -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++-14 -std=gnu++17 accepts -g... (cached) yes
checking whether g++ version is sufficient... almost
configure: WARNING: Compiler self-identifies as being compliant with GNUC extensions but is not g++.
checking for macOS... checking LAPACK_LIBS... system LAPACK found
configure: creating ./config.status
config.status: creating inst/include/RcppArmadilloConfigGenerated.h
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDy3DPo/R.INSTALL2546b71cb1d68d/ggdmc/src'
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Density.cpp -o Density.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c FCalculator.cpp -o FCalculator.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Initialise.cpp -o Initialise.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c LBA.cpp -o LBA.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Parameters.cpp -o Parameters.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Prior.cpp -o Prior.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c tnorm.cpp -o tnorm.o
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ggdmc.so Density.o FCalculator.o Initialise.o LBA.o Parameters.o Prior.o RcppExports.o tnorm.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDy3DPo/R.INSTALL2546b71cb1d68d/ggdmc/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDy3DPo/R.INSTALL2546b71cb1d68d/ggdmc/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDy3DPo/R.INSTALL2546b71cb1d68d/ggdmc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ggdmc/00new/ggdmc/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ggdmc’
    finding HTML links ... done
    BuildDMI                                html  
    BuildModel                              html  
    BuildPrior                              html  
    ConvertChains                           html  
    DIC                                     html  
    GetNsim                                 html  
    GetPNames                               html  
    GetParameterMatrix                      html  
    PickStuck                               html  
    StartNewsamples                         html  
    TableParameters                         html  
    check_pvec                              html  
    dbeta_lu                                html  
    dcauchy_l                               html  
    dconstant                               html  
    deviance.model                          html  
    dgamma_l                                html  
    dlnorm_l                                html  
    dtnorm                                  html  
    effectiveSize                           html  
    gelman                                  html  
    get_os                                  html  
    ggdmc                                   html  
    iseffective                             html  
    isflat                                  html  
    ismixed                                 html  
    isstuck                                 html  
    likelihood                              html  
    mcmc_list.model                         html  
    plot_prior                              html  
    print.prior                             html  
    random                                  html  
    rlba_norm                               html  
    rprior                                  html  
    simulate.model                          html  
    summary.model                           html  
    summary_mcmc_list                       html  
    theta2mcmclist                          html  
    unstick_one                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggdmc)