* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘geocmeans’ ... ** package ‘geocmeans’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4tjyMs/R.INSTALL1da6974780e839/geocmeans/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c FCM_functions.cpp -o FCM_functions.o FCM_functions.cpp: In function ‘Rcpp::NumericMatrix calcBelongMatrixNoisy(Rcpp::NumericMatrix, Rcpp::NumericMatrix, double, double, Rcpp::NumericVector)’: FCM_functions.cpp:211:9: warning: unused variable ‘k’ [-Wunused-variable] 211 | int i,k,j; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c GFCM_functions.cpp -o GFCM_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c focal_cpp.cpp -o focal_cpp.o focal_cpp.cpp: In function ‘Rcpp::NumericMatrix focal_euclidean_arr_window(arma::cube, arma::mat)’: focal_cpp.cpp:205:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 205 | for(i = 0; i < subcube.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~ focal_cpp.cpp:206:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 206 | for(j = 0; j < subcube.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~ focal_cpp.cpp: In function ‘arma::cube focal_adj_mean_arr_window(arma::cube, arma::mat)’: focal_cpp.cpp:287:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 287 | for(i = 0; i < subcube.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~ focal_cpp.cpp:288:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 288 | for(j = 0; j < subcube.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~ focal_cpp.cpp:303:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 303 | for(i = 0; i < subcube.n_slices; i++){ | ~~^~~~~~~~~~~~~~~~~~ focal_cpp.cpp:307:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 307 | for(i = 0; i < mat.n_slices; i++){ | ~~^~~~~~~~~~~~~~ focal_cpp.cpp:244:10: warning: unused variable ‘distsums’ [-Wunused-variable] 244 | double distsums; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c jaccard_idx.cpp -o jaccard_idx.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c moran_for_rasters.cpp -o moran_for_rasters.o moran_for_rasters.cpp: In function ‘double moranI_matrix_window(Rcpp::NumericMatrix, Rcpp::NumericMatrix)’: moran_for_rasters.cpp:83:9: warning: unused variable ‘weight’ [-Wunused-variable] 83 | float weight = 1.0; | ^~~~~~ moran_for_rasters.cpp: In function ‘Rcpp::NumericVector local_moranI_matrix_window(Rcpp::NumericMatrix, Rcpp::NumericMatrix)’: moran_for_rasters.cpp:164:9: warning: unused variable ‘weight’ [-Wunused-variable] 164 | float weight = 1.0; | ^~~~~~ moran_for_rasters.cpp: In function ‘Rcpp::NumericVector Elsa_fuzzy_matrix_window(arma::fcube, arma::mat, Rcpp::NumericMatrix)’: moran_for_rasters.cpp:536:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 536 | for (i = 0; i < subcube.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~ moran_for_rasters.cpp:537:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 537 | for(j = 0; j < subcube.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~ moran_for_rasters.cpp:543:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 543 | for(ii = 0; ii < xj.n_elem ; ii++){ | ~~~^~~~~~~~~~~ moran_for_rasters.cpp:544:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 544 | for(jj = 0; jj < xj.n_elem ; jj++){ | ~~~^~~~~~~~~~~ moran_for_rasters.cpp:480:7: warning: variable ‘wr’ set but not used [-Wunused-but-set-variable] 480 | int wr,wc; | ^~ moran_for_rasters.cpp:480:10: warning: variable ‘wc’ set but not used [-Wunused-but-set-variable] 480 | int wr,wc; | ^~ moran_for_rasters.cpp: In function ‘double adj_spconsist_arr_window_globstd(arma::fcube, arma::fcube, arma::mat, double)’: moran_for_rasters.cpp:671:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 671 | for (i = 0; i < subcube_dat.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~~~~~ moran_for_rasters.cpp:672:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 672 | for(j = 0; j < subcube_dat.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~~~~~ moran_for_rasters.cpp:742:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 742 | for (i = 0; i < subcube_dat.n_rows; i++){ | ~~^~~~~~~~~~~~~~~~~~~~ moran_for_rasters.cpp:743:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 743 | for(j = 0; j < subcube_dat.n_cols; j++){ | ~~^~~~~~~~~~~~~~~~~~~~ moran_for_rasters.cpp:613:27: warning: unused variable ‘nn’ [-Wunused-variable] 613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj; | ^~ moran_for_rasters.cpp:613:30: warning: unused variable ‘ii’ [-Wunused-variable] 613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj; | ^~ moran_for_rasters.cpp:613:33: warning: unused variable ‘jj’ [-Wunused-variable] 613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj; | ^~ moran_for_rasters.cpp:614:7: warning: unused variable ‘N’ [-Wunused-variable] 614 | int N = 0; | ^ moran_for_rasters.cpp:615:7: warning: variable ‘wr’ set but not used [-Wunused-but-set-variable] 615 | int wr,wc; | ^~ moran_for_rasters.cpp:615:10: warning: variable ‘wc’ set but not used [-Wunused-but-set-variable] 615 | int wr,wc; | ^~ moran_for_rasters.cpp:616:7: warning: unused variable ‘counter’ [-Wunused-variable] 616 | int counter = 0; | ^~~~~~~ moran_for_rasters.cpp:625:10: warning: unused variable ‘euc_dist’ [-Wunused-variable] 625 | double euc_dist, dij; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c shared_functions.cpp -o shared_functions.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o geocmeans.so FCM_functions.o GFCM_functions.o RcppExports.o focal_cpp.o jaccard_idx.o moran_for_rasters.o shared_functions.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4tjyMs/R.INSTALL1da6974780e839/geocmeans/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4tjyMs/R.INSTALL1da6974780e839/geocmeans/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4tjyMs/R.INSTALL1da6974780e839/geocmeans/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-geocmeans/00new/geocmeans/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘geocmeans’ finding HTML links ... done Arcachon html CMeans html Elsa_categorical_matrix_window html Elsa_fuzzy_matrix_window html FCMres html GCMeans html LyonIris html SFCMeans html SGFCMeans html add_matrices_bycol html adj_spconsist_arr_window_globstd html adjustSpatialWeights html barPlots html belongsFCM html belongsGFCM html belongsSFCM html belongsSGFCM html boot_group_validation html boot_group_validation.mc html boot_worker html calcBelongMatrix html calcBelongMatrixNoisy html calcCalinskiHarabasz html calcCentroids html calcDaviesBouldin html calcELSA html calcEuclideanDistance html calcEuclideanDistance2 html calcEuclideanDistance3 html calcFGCMBelongMatrix html calcFGCMBelongMatrixNoisy html calcFukuyamaSugeno html calcFuzzyELSA html calcFuzzyElsa_raster html calcGD43 html calcGD53 html calcLaggedData html calcNegentropyI html calcQualIdx html calcRobustSigmas html calcSFCMBelongMatrix html calcSFCMBelongMatrixNoisy html calcSFGCMBelongMatrix html calcSFGCMBelongMatrixNoisy html calcSWFCCentroids html calcSilhouetteIdx html calcUncertaintyIndex html calcWdataRaster html calc_jaccard_idx html calc_jaccard_mat html calc_local_moran_raster html calc_moran_raster html calc_raster_spinconsistency html calcexplainedInertia html calcqualityIndexes html cat_to_belongings html centersFCM html centersGFCM html centersSFCM html centersSGFCM html check_matdist html check_raters_dims html check_window html circular_window html div_matrices_bycol html elsa_fuzzy_vector html elsa_raster html elsa_vector html eval_parameters html evaluateMatrices html focal_adj_mean_arr_window html focal_euclidean html focal_euclidean_arr_window html focal_euclidean_mat_window html geocmeans html geocmeans_env html groups_matching html input_raster_data html is.FCMres html kppCenters html local_moranI_matrix_window html main_worker html mapClusters html mapRasters html mapThis html max_mat html moranI_matrix_window html output_raster_data html plot.FCMres html pow_matrices_bycol html power_mat html predict.FCMres html predict_membership html print.FCMres html prod_matrices_bycol html rowmins_mat html sanity_check html select_parameters html select_parameters.mc html spConsistency html sp_clust_explorer html spatialDiag html spiderPlots html sqrt_matrix_bycol html standardizer html sub_matrices_bycol html summarizeClusters html summary.FCMres html test_inferior_mat html uncertaintyMap html undecidedUnits html vecmin html vector_out_prod html violinPlots html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geocmeans)