* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘geocmeans’ ...
** package ‘geocmeans’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyTghaZ/R.INSTALL3a9df723b4b5ec/geocmeans/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c FCM_functions.cpp -o FCM_functions.o
FCM_functions.cpp: In function ‘Rcpp::NumericMatrix calcBelongMatrixNoisy(Rcpp::NumericMatrix, Rcpp::NumericMatrix, double, double, Rcpp::NumericVector)’:
FCM_functions.cpp:211:9: warning: unused variable ‘k’ [-Wunused-variable]
211 | int i,k,j;
| ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c GFCM_functions.cpp -o GFCM_functions.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c focal_cpp.cpp -o focal_cpp.o
focal_cpp.cpp: In function ‘Rcpp::NumericMatrix focal_euclidean_arr_window(arma::cube, arma::mat)’:
focal_cpp.cpp:205:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
205 | for(i = 0; i < subcube.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~
focal_cpp.cpp:206:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
206 | for(j = 0; j < subcube.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~
focal_cpp.cpp: In function ‘arma::cube focal_adj_mean_arr_window(arma::cube, arma::mat)’:
focal_cpp.cpp:287:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
287 | for(i = 0; i < subcube.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~
focal_cpp.cpp:288:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
288 | for(j = 0; j < subcube.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~
focal_cpp.cpp:303:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
303 | for(i = 0; i < subcube.n_slices; i++){
| ~~^~~~~~~~~~~~~~~~~~
focal_cpp.cpp:307:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
307 | for(i = 0; i < mat.n_slices; i++){
| ~~^~~~~~~~~~~~~~
focal_cpp.cpp:244:10: warning: unused variable ‘distsums’ [-Wunused-variable]
244 | double distsums;
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c jaccard_idx.cpp -o jaccard_idx.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c moran_for_rasters.cpp -o moran_for_rasters.o
moran_for_rasters.cpp: In function ‘double moranI_matrix_window(Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
moran_for_rasters.cpp:83:9: warning: unused variable ‘weight’ [-Wunused-variable]
83 | float weight = 1.0;
| ^~~~~~
moran_for_rasters.cpp: In function ‘Rcpp::NumericVector local_moranI_matrix_window(Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
moran_for_rasters.cpp:164:9: warning: unused variable ‘weight’ [-Wunused-variable]
164 | float weight = 1.0;
| ^~~~~~
moran_for_rasters.cpp: In function ‘Rcpp::NumericVector Elsa_fuzzy_matrix_window(arma::fcube, arma::mat, Rcpp::NumericMatrix)’:
moran_for_rasters.cpp:536:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
536 | for (i = 0; i < subcube.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~
moran_for_rasters.cpp:537:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
537 | for(j = 0; j < subcube.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~
moran_for_rasters.cpp:543:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
543 | for(ii = 0; ii < xj.n_elem ; ii++){
| ~~~^~~~~~~~~~~
moran_for_rasters.cpp:544:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
544 | for(jj = 0; jj < xj.n_elem ; jj++){
| ~~~^~~~~~~~~~~
moran_for_rasters.cpp:480:7: warning: variable ‘wr’ set but not used [-Wunused-but-set-variable]
480 | int wr,wc;
| ^~
moran_for_rasters.cpp:480:10: warning: variable ‘wc’ set but not used [-Wunused-but-set-variable]
480 | int wr,wc;
| ^~
moran_for_rasters.cpp: In function ‘double adj_spconsist_arr_window_globstd(arma::fcube, arma::fcube, arma::mat, double)’:
moran_for_rasters.cpp:671:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
671 | for (i = 0; i < subcube_dat.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~~~~~
moran_for_rasters.cpp:672:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
672 | for(j = 0; j < subcube_dat.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~~~~~
moran_for_rasters.cpp:742:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
742 | for (i = 0; i < subcube_dat.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~~~~~
moran_for_rasters.cpp:743:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
743 | for(j = 0; j < subcube_dat.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~~~~~
moran_for_rasters.cpp:613:27: warning: unused variable ‘nn’ [-Wunused-variable]
613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj;
| ^~
moran_for_rasters.cpp:613:30: warning: unused variable ‘ii’ [-Wunused-variable]
613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj;
| ^~
moran_for_rasters.cpp:613:33: warning: unused variable ‘jj’ [-Wunused-variable]
613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj;
| ^~
moran_for_rasters.cpp:614:7: warning: unused variable ‘N’ [-Wunused-variable]
614 | int N = 0;
| ^
moran_for_rasters.cpp:615:7: warning: variable ‘wr’ set but not used [-Wunused-but-set-variable]
615 | int wr,wc;
| ^~
moran_for_rasters.cpp:615:10: warning: variable ‘wc’ set but not used [-Wunused-but-set-variable]
615 | int wr,wc;
| ^~
moran_for_rasters.cpp:616:7: warning: unused variable ‘counter’ [-Wunused-variable]
616 | int counter = 0;
| ^~~~~~~
moran_for_rasters.cpp:625:10: warning: unused variable ‘euc_dist’ [-Wunused-variable]
625 | double euc_dist, dij;
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c shared_functions.cpp -o shared_functions.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o geocmeans.so FCM_functions.o GFCM_functions.o RcppExports.o focal_cpp.o jaccard_idx.o moran_for_rasters.o shared_functions.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyTghaZ/R.INSTALL3a9df723b4b5ec/geocmeans/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyTghaZ/R.INSTALL3a9df723b4b5ec/geocmeans/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyTghaZ/R.INSTALL3a9df723b4b5ec/geocmeans/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-geocmeans/00new/geocmeans/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘geocmeans’
finding HTML links ... done
Arcachon html
CMeans html
Elsa_categorical_matrix_window html
Elsa_fuzzy_matrix_window html
FCMres html
GCMeans html
LyonIris html
SFCMeans html
SGFCMeans html
add_matrices_bycol html
adj_spconsist_arr_window_globstd html
adjustSpatialWeights html
barPlots html
belongsFCM html
belongsGFCM html
belongsSFCM html
belongsSGFCM html
boot_group_validation html
boot_group_validation.mc html
boot_worker html
calcBelongMatrix html
calcBelongMatrixNoisy html
calcCalinskiHarabasz html
calcCentroids html
calcDaviesBouldin html
calcELSA html
calcEuclideanDistance html
calcEuclideanDistance2 html
calcEuclideanDistance3 html
calcFGCMBelongMatrix html
calcFGCMBelongMatrixNoisy html
calcFukuyamaSugeno html
calcFuzzyELSA html
calcFuzzyElsa_raster html
calcGD43 html
calcGD53 html
calcLaggedData html
calcNegentropyI html
calcQualIdx html
calcRobustSigmas html
calcSFCMBelongMatrix html
calcSFCMBelongMatrixNoisy html
calcSFGCMBelongMatrix html
calcSFGCMBelongMatrixNoisy html
calcSWFCCentroids html
calcSilhouetteIdx html
calcUncertaintyIndex html
calcWdataRaster html
calc_jaccard_idx html
calc_jaccard_mat html
calc_local_moran_raster html
calc_moran_raster html
calc_raster_spinconsistency html
calcexplainedInertia html
calcqualityIndexes html
cat_to_belongings html
centersFCM html
centersGFCM html
centersSFCM html
centersSGFCM html
check_matdist html
check_raters_dims html
check_window html
circular_window html
div_matrices_bycol html
elsa_fuzzy_vector html
elsa_raster html
elsa_vector html
eval_parameters html
evaluateMatrices html
focal_adj_mean_arr_window html
focal_euclidean html
focal_euclidean_arr_window html
focal_euclidean_mat_window html
geocmeans html
geocmeans_env html
groups_matching html
input_raster_data html
is.FCMres html
kppCenters html
local_moranI_matrix_window html
main_worker html
mapClusters html
mapRasters html
mapThis html
max_mat html
moranI_matrix_window html
output_raster_data html
plot.FCMres html
pow_matrices_bycol html
power_mat html
predict.FCMres html
predict_membership html
print.FCMres html
prod_matrices_bycol html
rowmins_mat html
sanity_check html
select_parameters html
select_parameters.mc html
spConsistency html
sp_clust_explorer html
spatialDiag html
spiderPlots html
sqrt_matrix_bycol html
standardizer html
sub_matrices_bycol html
summarizeClusters html
summary.FCMres html
test_inferior_mat html
uncertaintyMap html
undecidedUnits html
vecmin html
vector_out_prod html
violinPlots html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geocmeans)