* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘gapmap’ ...
** package ‘gapmap’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘gapmap’
    finding HTML links ... done
    as.gapdata                              html  
    assign_branch_positions                 html  
    assign_positions                        html  
    calculate_gap                           html  
    count_gap                               html  
    extract_list                            html  
    format_number                           html  
    gap_data                                html  
    gap_dendrogram                          html  
    gap_heatmap                             html  
    gap_label                               html  
    gapmap-package                          html  
    gapmap                                  html  
    get_most_left_leaf                      html  
    get_most_right_leaf                     html  
    get_segment_df                          html  
    is.gapdata                              html  
    map                                     html  
    map.exp                                 html  
    sample_tcga                             html  
    set_most_right_leaf                     html  
    sum_distance                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gapmap)