* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘freesurferformats’ ...
** package ‘freesurferformats’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘freesurferformats’
finding HTML links ... done
adjust.face.indices.to html
annot.max.region.idx html
annot.unique html
assert.surface html
bvsmp html
cdata html
check.dtype.for.data html
check_data_and_settings_consistency html
closest.vert.to.point html
colortable.from.annot html
coord.to.key html
delete_all_opt_data html
doapply.transform.mtx html
download_opt_data html
euclidian.dist html
faces.quad.to.tris html
faces.tris.to.quad html
fileopen.gz.or.not html
filepath.ends.with html
fixed.vec.format.int html
flip2D html
flip3D html
fread3 html
fs.get.morph.file.ext.for.format html
fs.get.morph.file.format.from.filename
html
fs.patch html
fs.surface.to.tmesh3d html
fwrite3 html
get.dti.trk.endianness html
get.slice.orientation html
get_opt_data_filepath html
gifti_writer html
gifti_xml html
gifti_xml_add_global_metadata html
gifti_xml_write html
giftixml_add_labeltable_from_annot html
giftixml_add_labeltable_posneg html
guess.filename.is.gzipped html
has_pandoc html
int.to.col.brainvoyager html
is.bvsmp html
is.fs.annot html
is.fs.label html
is.fs.surface html
is.fs.volume html
is.mghheader html
linesplit.fixed html
list_opt_data html
mgh.is.conformed html
mghheader html
mghheader.centervoxelRAS.from.firstvoxelRAS
html
mghheader.crs.orientation html
mghheader.is.conformed html
mghheader.is.ras.valid html
mghheader.primary.slice.direction html
mghheader.ras2vox html
mghheader.ras2vox.tkreg html
mghheader.scanner2tkreg html
mghheader.tkreg2scanner html
mghheader.update.from.vox2ras html
mghheader.vox2ras html
mghheader.vox2ras.tkreg html
mghheader.vox2vox html
mni152reg html
mri_dtype_numbytes html
ni1header.for.data html
ni1header.template html
ni2header.for.data html
ni2header.template html
nifti.datadim.from.dimfield html
nifti.datadim.to.dimfield html
nifti.dtype.info html
nifti.field.check.length html
nifti.field.check.nchar.max html
nifti.file.uses.fshack html
nifti.file.version html
nifti.header.check html
nifti.space.info html
nifti.time.info html
nifti.transform.type.name html
parse.stl.ascii.face html
parse.transform.matrix.lines html
ply.header.lines html
polygon.soup.to.indexed.mesh html
print.fs.annot html
print.fs.label html
print.fs.patch html
print.fs.surface html
print.fs.volume html
ras.to.surfaceras html
ras.to.talairachras html
read.dti.tck html
read.dti.trk html
read.dti.tsf html
read.element.counts.ply.header html
read.fixed.char.binary html
read.fs.annot html
read.fs.annot.gii html
read.fs.colortable html
read.fs.curv html
read.fs.gca html
read.fs.label html
read.fs.label.gii html
read.fs.label.native html
read.fs.mgh html
read.fs.morph html
read.fs.morph.asc html
read.fs.morph.bvsmp html
read.fs.morph.cifti html
read.fs.morph.gii html
read.fs.morph.ni1 html
read.fs.morph.ni2 html
read.fs.morph.nii html
read.fs.morph.txt html
read.fs.patch html
read.fs.patch.asc html
read.fs.surface html
read.fs.surface.asc html
read.fs.surface.bvsrf html
read.fs.surface.byu html
read.fs.surface.geo html
read.fs.surface.gii html
read.fs.surface.ico html
read.fs.surface.mz3 html
read.fs.surface.obj html
read.fs.surface.off html
read.fs.surface.ply html
read.fs.surface.stl html
read.fs.surface.stl.ascii html
read.fs.surface.stl.bin html
read.fs.surface.vtk html
read.fs.transform html
read.fs.transform.dat html
read.fs.transform.lta html
read.fs.transform.xfm html
read.fs.volume html
read.fs.volume.nii html
read.fs.weight html
read.fs.weight.asc html
read.mesh.brainvoyager html
read.nifti1.data html
read.nifti1.header html
read.nifti1.header.internal html
read.nifti2.data html
read.nifti2.header html
read.nifti2.header.internal html
read.smp.brainvoyager html
read.smp.brainvoyager.v1or2 html
read.smp.brainvoyager.v3 html
read.smp.brainvoyager.v4or5 html
read_nisurface html
read_nisurfacefile html
read_nisurfacefile.fsascii html
read_nisurfacefile.fsnative html
read_nisurfacefile.gifti html
readable.files html
readcolortable html
readcolortable_oldformat html
rotate2D html
rotate3D html
rotate90 html
scann html
sm0to1 html
sm1to0 html
stl.format.file.is.ascii html
surfaceras.to.ras html
surfaceras.to.talairach html
talairachras.to.ras html
translate.mri.dtype html
vertex.euclid.dist html
vertexdists.to.point html
write.fs.annot html
write.fs.annot.gii html
write.fs.colortable html
write.fs.curv html
write.fs.label html
write.fs.label.gii html
write.fs.mgh html
write.fs.morph html
write.fs.morph.asc html
write.fs.morph.gii html
write.fs.morph.ni1 html
write.fs.morph.ni2 html
write.fs.morph.smp html
write.fs.morph.txt html
write.fs.patch html
write.fs.surface html
write.fs.surface.asc html
write.fs.surface.bvsrf html
write.fs.surface.byu html
write.fs.surface.gii html
write.fs.surface.mz3 html
write.fs.surface.obj html
write.fs.surface.off html
write.fs.surface.off.ply2 html
write.fs.surface.ply html
write.fs.surface.ply2 html
write.fs.surface.vtk html
write.fs.weight html
write.fs.weight.asc html
write.nifti1 html
write.nifti2 html
write.smp.brainvoyager html
write.smp.brainvoyager.v2 html
write.smp.brainvoyager.v3or4or5 html
xml_node_gifti_MD html
xml_node_gifti_coordtransform html
xml_node_gifti_label html
xml_node_gifti_label_table html
xml_node_gifti_label_table_from_annot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (freesurferformats)