* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘fio’ ...
** package ‘fio’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.80.1 (376290515 2024-07-16)
Using rustc 1.80.1
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src'
rm -Rf fio.so ./rust/target/release/libfio.a entrypoint.o /home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src/.cargo /home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src/vendor
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src/.cargo && \
cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src/.cargo/config.toml; \
fi
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "" != "true" ]; then \
export CARGO_HOME=/home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src/.cargo; \
fi && \
export PATH="/home/hornik/bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \
cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target && \
echo "Rust version:" `rustc --version` && \
echo "Cargo version:" `cargo --version`;
Compiling proc-macro2 v1.0.86
Compiling autocfg v1.3.0
Compiling libm v0.2.8
Compiling num-traits v0.2.19
Compiling unicode-ident v1.0.12
Compiling quote v1.0.36
Compiling rand_core v0.6.4
Compiling syn v2.0.71
Compiling rand v0.8.5
Compiling bytemuck v1.16.1
Compiling num-complex v0.4.6
Compiling nano-gemm-codegen v0.1.0
Compiling crossbeam-utils v0.8.20
Compiling thiserror v1.0.62
Compiling crossbeam-epoch v0.9.18
Compiling reborrow v0.5.5
Compiling paste v1.0.15
Compiling rayon-core v1.12.1
Compiling crossbeam-deque v0.8.5
Compiling thiserror-impl v1.0.62
Compiling pulp v0.18.21
Compiling bitflags v1.3.2
Compiling either v1.13.0
Compiling once_cell v1.19.0
Compiling rayon v1.10.0
Compiling raw-cpuid v10.7.0
Compiling dyn-stack v0.10.0
Compiling ucd-trie v0.1.6
Compiling seq-macro v0.3.5
Compiling memchr v2.7.4
Compiling gemm-common v0.18.0
Compiling pest v2.7.11
Compiling nano-gemm-core v0.1.0
Compiling pest_meta v2.7.11
Compiling nano-gemm-c32 v0.1.0
Compiling nano-gemm-f32 v0.1.0
Compiling nano-gemm-f64 v0.1.0
Compiling pest_generator v2.7.11
Compiling nano-gemm-c64 v0.1.0
Compiling num-integer v0.1.46
Compiling libR-sys v0.7.0 (https://github.com/extendr/libR-sys?rev=976c56d396175f8d09548b0a1f0a77fc393018f2#976c56d3)
Compiling pest_derive v2.7.11
Compiling num-bigint v0.4.6
Compiling equator-macro v0.2.1
Compiling serde v1.0.204
Compiling libc v0.2.155
Compiling equator v0.2.2
Compiling py_literal v0.4.0
Compiling gemm-c64 v0.18.0
Compiling gemm-f64 v0.18.0
Compiling gemm-f32 v0.18.0
Compiling gemm-c32 v0.18.0
Compiling serde_derive v1.0.204
Compiling byteorder v1.5.0
Compiling extendr-api v0.7.0
Compiling coe-rs v0.1.2
Compiling matrixcompare-core v0.1.0
Compiling faer-entity v0.19.0
Compiling matrixcompare v0.3.0
Compiling npyz v0.8.3
Compiling gemm v0.18.0
Compiling nano-gemm v0.1.2
Compiling extendr-macros v0.7.0
Compiling rand_distr v0.4.3
Compiling dbgf v0.1.2
Compiling faer v0.19.1
Compiling num_cpus v1.16.0
Compiling fio v0.1.1 (/home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src/rust)
Finished `release` profile [optimized] target(s) in 3m 20s
Rust version: rustc 1.80.1
Cargo version: cargo 1.80.1 (376290515 2024-07-16)
rm -Rf /home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src/.cargo /home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src/vendor ./rust/target/release/build; \
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o fio.so entrypoint.o -L./rust/target/release -lfio -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRb84cy/R.INSTALLd6bde54bfa47e/fio/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-fio/00new/fio/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘fio’
finding HTML links ... done
br_2020 html
fio_addin html
import_element html
iom html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fio)