* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘fastSOM’ ...
** package ‘fastSOM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfDt9G6/R.INSTALL1b8c63507424f/fastSOM/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Helpers.c -o Helpers.o
Helpers.c:69:68: warning: duplicate ‘const’ declaration specifier [-Wduplicate-decl-specifier]
   69 | void chol_part_C(const double * const s, int n, int col, const int const * perm, double * res)
      |                                                                    ^~~~~
Helpers.c: In function ‘solve_sym’:
Helpers.c:27:19: warning: ‘*tmpL’ may be used uninitialized [-Wmaybe-uninitialized]
   27 |         tmpL[0] = sqrt(tmpL[0]);
      |                   ^~~~~~~~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SOM.c -o SOM.o
SOM.c:7:68: warning: duplicate ‘const’ declaration specifier [-Wduplicate-decl-specifier]
    7 | void chol_part_C(const double * const s, int n, int col, const int const * perm, double * res);
      |                                                                    ^~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c fastSOM.c -o fastSOM.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o fastSOM.so Helpers.o SOM.o fastSOM.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfDt9G6/R.INSTALL1b8c63507424f/fastSOM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfDt9G6/R.INSTALL1b8c63507424f/fastSOM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfDt9G6/R.INSTALL1b8c63507424f/fastSOM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-fastSOM/00new/fastSOM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘fastSOM’
    finding HTML links ... done
    fastSOM-package                         html  
    soi                                     html  
    soi_avg_est                             html  
    soi_avg_exact                           html  
    soi_from_sot                            html  
    sot                                     html  
    sot_avg_est                             html  
    sot_avg_exact                           html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastSOM)