* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘epizootic’ ...
** package ‘epizootic’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2uVfAo/R.INSTALL2f145729ba7b6/epizootic/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c aspatial_siri.cpp -o aspatial_siri.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2uVfAo/R.INSTALL2f145729ba7b6/epizootic/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2uVfAo/R.INSTALL2f145729ba7b6/epizootic/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2uVfAo/R.INSTALL2f145729ba7b6/epizootic/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-epizootic/00new/epizootic/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘epizootic’
    finding HTML links ... done
    DiseaseModel                            html  
    SimulationHandler                       html  
    aspatial_siri                           html  
    bsl_raster                              html  
    check_aspatial_siri_inputs              html  
    check_simulator_inputs                  html  
    disease_dispersal                       html  
    disease_results                         html  
    disease_simulator                       html  
    disease_transformation                  html  
    disease_transitions                     html  
    epizootic-package                       html  
    finch_region                            html  
    habitat_suitability                     html  
    initial_abundance                       html  
    siri_model_summer                       html  
    siri_model_winter                       html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (epizootic)