* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘ecr’ ... ** package ‘ecr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKDqRfj/R.INSTALL1ae52333f9e052/ecr/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DVARIANT=4 -c -o avl.o avl.c gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c computeHypervolume.c -o computeHypervolume.o In file included from computeHypervolume.c:4: computeHypervolume.c: In function ‘computeHVC’: computeHypervolume.c:18:52: warning: unused variable ‘len_ref’ [-Wunused-variable] 18 | EXTRACT_NUMERIC_VECTOR(r_ref_point, c_ref_point, len_ref); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ computeHypervolume.c: In function ‘computeHVContributionC’: computeHypervolume.c:44:52: warning: unused variable ‘n_ref_point’ [-Wunused-variable] 44 | EXTRACT_NUMERIC_VECTOR(r_ref_point, c_ref_point, n_ref_point); | ^~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crowdingDistance.c -o crowdingDistance.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dominance.c -o dominance.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c emoa.indicators.cpp -o emoa.indicators.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eps_ind.c -o eps_ind.o In file included from eps_ind.c:38: eps_ind.c: In function ‘emoaIndEpsC’: eps_ind.c:112:52: warning: unused variable ‘n_ref_objectives’ [-Wunused-variable] 112 | EXTRACT_NUMERIC_MATRIX(ref_points, c_ref_points, n_ref_objectives, n_ref_points); | ^~~~~~~~~~~~~~~~ macros.h:11:19: note: in definition of macro ‘EXTRACT_NUMERIC_MATRIX’ 11 | const R_len_t N_ROW = nrows(S_EXP); \ | ^~~~~ eps_ind.c:64:16: warning: ‘eps_j’ may be used uninitialized [-Wmaybe-uninitialized] 64 | double eps, eps_j, eps_k, eps_temp; | ^~~~~ In file included from eps_ind.c:36: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘eps’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | #define ScalarReal Rf_ScalarReal eps_ind.c:120:10: note: in expansion of macro ‘ScalarReal’ 120 | return ScalarReal(eps_ind); | ^~~~~~~~~~ eps_ind.c:64:11: note: ‘eps’ was declared here 64 | double eps, eps_j, eps_k, eps_temp; | ^~~ eps_ind.c:64:23: warning: ‘eps_k’ may be used uninitialized [-Wmaybe-uninitialized] 64 | double eps, eps_j, eps_k, eps_temp; | ^~~~~ gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c helpers.c -o helpers.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DVARIANT=4 -c -o hv.o hv.c gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c polynomialMutation.c -o polynomialMutation.o In file included from polynomialMutation.c:4: polynomialMutation.c: In function ‘polynomialMutationC’: polynomialMutation.c:29:42: warning: unused variable ‘c_upper_length’ [-Wunused-variable] 29 | EXTRACT_NUMERIC_VECTOR(upper, c_upper, c_upper_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ polynomialMutation.c:28:42: warning: unused variable ‘c_lower_length’ [-Wunused-variable] 28 | EXTRACT_NUMERIC_VECTOR(lower, c_lower, c_lower_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_ind.c -o r_ind.o In file included from r_ind.c:35: r_ind.c: In function ‘do_unary_r2_ind’: r_ind.c:197:44: warning: unused variable ‘n_ideal’ [-Wunused-variable] 197 | EXTRACT_NUMERIC_VECTOR(s_ideal, ideal, n_ideal); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ r_ind.c:196:48: warning: unused variable ‘k_weights’ [-Wunused-variable] 196 | EXTRACT_NUMERIC_MATRIX(s_weights, weights, k_weights, n_weights); | ^~~~~~~~~ macros.h:11:19: note: in definition of macro ‘EXTRACT_NUMERIC_MATRIX’ 11 | const R_len_t N_ROW = nrows(S_EXP); \ | ^~~~~ r_ind.c: In function ‘computeRIndicatorC’: r_ind.c:242:44: warning: unused variable ‘n_nadir’ [-Wunused-variable] 242 | EXTRACT_NUMERIC_VECTOR(s_nadir, nadir, n_nadir); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ r_ind.c:241:44: warning: unused variable ‘n_ideal’ [-Wunused-variable] 241 | EXTRACT_NUMERIC_VECTOR(s_ideal, ideal, n_ideal); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simulatedBinaryCrossover.c -o simulatedBinaryCrossover.o In file included from simulatedBinaryCrossover.c:4: simulatedBinaryCrossover.c: In function ‘simulatedBinaryCrossoverC’: simulatedBinaryCrossover.c:50:42: warning: unused variable ‘c_upper_length’ [-Wunused-variable] 50 | EXTRACT_NUMERIC_VECTOR(upper, c_upper, c_upper_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ simulatedBinaryCrossover.c:49:42: warning: unused variable ‘c_lower_length’ [-Wunused-variable] 49 | EXTRACT_NUMERIC_VECTOR(lower, c_lower, c_lower_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ simulatedBinaryCrossover.c:46:49: warning: unused variable ‘n’ [-Wunused-variable] 46 | EXTRACT_NUMERIC_MATRIX(parents, c_parents, d, n); | ^ macros.h:12:19: note: in definition of macro ‘EXTRACT_NUMERIC_MATRIX’ 12 | const R_len_t N_COL = ncols(S_EXP); | ^~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ecr.so RcppExports.o avl.o computeHypervolume.o crowdingDistance.o dominance.o emoa.indicators.o eps_ind.o helpers.o hv.o polynomialMutation.o r_ind.o simulatedBinaryCrossover.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKDqRfj/R.INSTALL1ae52333f9e052/ecr/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKDqRfj/R.INSTALL1ae52333f9e052/ecr/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKDqRfj/R.INSTALL1ae52333f9e052/ecr/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ecr/00new/ecr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘ecr’ finding HTML links ... done addUnionGroup html approximateRefPoints html approximateRefSets html asemoa html categorize html computeAverageHausdorffDistance html computeCrowdingDistance html computeDistanceFromPointToSetOfPoints html computeDominanceRanking html computeGenerationalDistance html computeIndicators html computeInvertedGenerationalDistance html doNondominatedSorting html dominated html dominated_hypervolume html dominates html ecr html ecr_parallelization html ecr_result html emoa_indicators html evaluateFitness html explode html filterDuplicated html generateOffspring html generatesMultipleChildren html generators html getFront html getIndividuals html getNumberOfChildren html getNumberOfParentsNeededForMating html getPopulationFitness html getPopulations html getSize html getStatistics html getSupportedRepresentations html initECRControl html initLogger html initParetoArchive html initPopulation html is.supported html isEcrOperator html makeECRMonitor html makeEMOAIndicator html makeMutator html makeOperator html makeOptimizationTask html makeRecombinator html makeSelector html makeTerminator html mcMST html mutBitflip html mutGauss html mutInsertion html mutInversion html mutJump html mutPolynomial html mutScramble html mutSwap html mutUniform html niceCellFormater html normalize html nsga2 html plotDistribution html plotFront html plotHeatmap html plotScatter2d html plotScatter3d html plotStatistics html recCrossover html recIntermediate html recOX html recPMX html recSBX html recUnifCrossover html reduceToSingleDataFrame html reference_point_approximation html registerECROperator html replace html selDomHV html selGreedy html selNondom html selRanking html selRoulette html selSimple html selTournament html select html setDominates html setup html setupECRDefaultMonitor html smsemoa html sortByObjective html stoppingConditions html toGG html toLatex html toParetoDf html transformFitness html updateLogger html updateParetoArchive html which.dominated html wrapChildren html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ecr)