* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘eDITH’ ...
** this is package ‘eDITH’ version ‘1.0.0’
** package ‘eDITH’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAjhTir/R.INSTALL10c10436cf148a/eDITH/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c evalConc2.cpp -o evalConc2.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o eDITH.so RcppExports.o evalConc2.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAjhTir/R.INSTALL10c10436cf148a/eDITH/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAjhTir/R.INSTALL10c10436cf148a/eDITH/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAjhTir/R.INSTALL10c10436cf148a/eDITH/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-eDITH/00new/eDITH/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘eDITH’
    finding HTML links ... done
    dataC                                   html  
    dataCD                                  html  
    dataRead                                html  
    eDITH-package                           html  
    eval_posterior_eDITH                    html  
Rd warning: eval_posterior_eDITH.Rd:16: missing link ‘aggregate_river’
    outSample                               html  
    posterior_pred_sim_eDITH                html  
Rd warning: posterior_pred_sim_eDITH.Rd:19: missing link ‘aggregate_river’
Rd warning: posterior_pred_sim_eDITH.Rd:35: missing link ‘DHARMa’
    run_eDITH_BT                            html  
Rd warning: run_eDITH_BT.Rd:30: missing link ‘aggregate_river’
Rd warning: run_eDITH_BT.Rd:40: missing link ‘river_to_AEM’
Rd warning: run_eDITH_BT.Rd:52: missing link ‘runMCMC’
Rd warning: run_eDITH_BT.Rd:54: missing link ‘createBayesianSetup’
Rd warning: run_eDITH_BT.Rd:57: missing link ‘createBayesianSetup’
Rd warning: run_eDITH_BT.Rd:60: missing link ‘runMCMC’
Rd warning: run_eDITH_BT.Rd:79: missing link ‘dtrunc’
Rd warning: run_eDITH_BT.Rd:88: missing link ‘MAP’
Rd warning: run_eDITH_BT.Rd:97: missing link ‘getCredibleIntervals’
Rd warning: run_eDITH_BT.Rd:98: missing link ‘gelmanDiagnostics’
Rd warning: run_eDITH_BT.Rd:101: missing link ‘runMCMC’
    run_eDITH_BT_joint                      html  
Rd warning: run_eDITH_BT_joint.Rd:42: missing link ‘aggregate_river’
Rd warning: run_eDITH_BT_joint.Rd:52: missing link ‘river_to_AEM’
Rd warning: run_eDITH_BT_joint.Rd:64: missing link ‘runMCMC’
Rd warning: run_eDITH_BT_joint.Rd:66: missing link ‘createBayesianSetup’
Rd warning: run_eDITH_BT_joint.Rd:69: missing link ‘createBayesianSetup’
Rd warning: run_eDITH_BT_joint.Rd:72: missing link ‘runMCMC’
Rd warning: run_eDITH_BT_joint.Rd:94: missing link ‘dtrunc’
Rd warning: run_eDITH_BT_joint.Rd:103: missing link ‘MAP’
Rd warning: run_eDITH_BT_joint.Rd:112: missing link ‘getCredibleIntervals’
Rd warning: run_eDITH_BT_joint.Rd:113: missing link ‘gelmanDiagnostics’
Rd warning: run_eDITH_BT_joint.Rd:116: missing link ‘runMCMC’
    run_eDITH_optim                         html  
Rd warning: run_eDITH_optim.Rd:30: missing link ‘aggregate_river’
Rd warning: run_eDITH_optim.Rd:40: missing link ‘river_to_AEM’
    run_eDITH_optim_joint                   html  
Rd warning: run_eDITH_optim_joint.Rd:42: missing link ‘aggregate_river’
Rd warning: run_eDITH_optim_joint.Rd:52: missing link ‘river_to_AEM’
    run_eDITH_single                        html  
Rd warning: run_eDITH_single.Rd:36: missing link ‘aggregate_river’
    sampling_strategy_direct                html  
Rd warning: sampling_strategy_direct.Rd:15: missing link ‘aggregate_river’
    sampling_strategy_eDNA                  html  
Rd warning: sampling_strategy_eDNA.Rd:15: missing link ‘paths_river’
    wigger                                  html  
Rd warning: wigger.Rd:5: missing link ‘extract_river’
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (eDITH)