* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘dti’ ... ** package ‘dti’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-1) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmps9Ds30/R.INSTALL12907e1dd9396e/dti/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Converter.cpp -o Converter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Fiber.cpp -o Fiber.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Fibertracking.cpp -o Fibertracking.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c LawsonHansonnnls.f -o LawsonHansonnnls.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TrackingInterface.cpp -o TrackingInterface.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Vector.cpp -o Vector.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c VectorList.cpp -o VectorList.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Voxel.cpp -o Voxel.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c aniso.f -o aniso.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c awsvar.f -o awsvar.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bessel.c -o bessel.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bmixtensorpl.c -o bmixtensorpl.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c dtifull.f -o dtifull.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c dtinraw2.f -o dtinraw2.o dtinraw2.f:102:41: 102 | double precision x(10000),fw(10000) | 1 Warning: Array ‘fw’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] dtinraw2.f:102:31: 102 | double precision x(10000),fw(10000) | 1 Warning: Array ‘x’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] gfortran-14 -fpic -g -O2 -Wall -mtune=native -c fibers.f -o fibers.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c misc.f -o misc.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c mixtenbv.f -o mixtenbv.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c mixtens.f -o mixtens.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c mixtensl.f -o mixtensl.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mixtensorpl.c -o mixtensorpl.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c nlrdtirg.f -o nlrdtirg.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c rice.f -o rice.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c show3d.f -o show3d.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c smse3.f -o smse3.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c tensor.f -o tensor.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tensorc.c -o tensorc.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dti.so Converter.o Fiber.o Fibertracking.o LawsonHansonnnls.o TrackingInterface.o Vector.o VectorList.o Voxel.o aniso.o awsvar.o bessel.o bmixtensorpl.o dtifull.o dtinraw2.o fibers.o init.o misc.o mixtenbv.o mixtens.o mixtensl.o mixtensorpl.o nlrdtirg.o rice.o show3d.o smse3.o tensor.o tensorc.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmps9Ds30/R.INSTALL12907e1dd9396e/dti/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmps9Ds30/R.INSTALL12907e1dd9396e/dti/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmps9Ds30/R.INSTALL12907e1dd9396e/dti/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-dti/00new/dti/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘dti’ finding HTML links ... done AdjacencyMatrix html awssigmc html colqFA html combineDWIdata html dkiTensor-methods html dti-class html dti-package html dti.options html dti.smooth-methods html dtiIndices-methods html dtiTensor-methods html dwi.smooth-methods html dwiMD-methods html dwiMixtensor-methods html dwiQball-methods html dwiRiceBias-methods html dwiSqrtODF-methods html extract-methods html getmask-methods html getsdofsb-methods html medinria html optgrad html optgradients html plot-methods html polyeder html print-methods html readDWIdata html sdpar-methods html setmask-methods html show-methods html show3d-methods html showFAColorScale html subsetg html summary-methods html tracking-methods html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dti)