* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘dowser’ ... ** package ‘dowser’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘dowser’ finding HTML links ... done BiopsyTrees html ExampleAirr html ExampleClones html ExampleDbChangeo html ExampleMixedClones html ExampleMixedDb html IsotypeTrees html TimeTrees html airrClone-class html bootstrapTrees html buildClonalGermline html buildGermline html buildIgphyml html buildPML html buildPhylo html buildPratchet html buildRAxML html calcRF html collapseNodes html colorTrees html condenseTrees html correlationTest html createGermlines html dfToFasta html downsampleClone html dowser-package html dowser html exportTrees html findSwitches html formatClones html getAllSeqs html getBootstraps html getDivergence html getGermline html getNodeSeq html getPalette html getSeq html getSubTaxa html getSubclones html getTrees html makeAirrClone html makeModelFile html maskCodons html maskSequences html plotTrees html readFasta html readIMGT html readLineages html readModelFile html reconIgPhyML html rerootTree html resolveLightChains html resolvePolytomies html runCorrelationTest html scaleBranches html stitchRegions html stitchVDJ html testPS html testSC html testSP html treesToPDF html writeCloneSequences html writeLineageFile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dowser)