* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘dnapath’ ... ** package ‘dnapath’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8wa5DV/R.INSTALL33d7b359b5bff/dnapath/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c dnaC.cpp -o dnaC.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dnapath.so RcppExports.o dnaC.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8wa5DV/R.INSTALL33d7b359b5bff/dnapath/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8wa5DV/R.INSTALL33d7b359b5bff/dnapath/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8wa5DV/R.INSTALL33d7b359b5bff/dnapath/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-dnapath/00new/dnapath/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘dnapath’ finding HTML links ... done biomart_hsapiens html c.dnapath html c.dnapath_list html combine_overlapping_pathways html d_edgesC html d_genesC html d_pathwayC html dna_pathway html dnapath html entrez_to_symbol html filter_pathways html format_species_name html get_biomart_mapping html get_genes html get_mean_expr_mat html get_min_alpha html get_networks html get_reactome_pathways html head.dnapath_list html init_mart html length.dnapath_list html meso html names.dnapath html names.dnapath_list html p53_pathways html plot.dnapath html plot_pair html print.dnapath html print.dnapath_list html rename_genes html rev.dnapath_list html run_aracne html run_bc3net html run_c3net html run_clr html run_corr html run_genie3 html run_glasso html run_mrnet html run_pcor html run_pcor_fdr html run_silencer html sort.dnapath_list html sub-.dnapath html sub-.dnapath_list html sub-sub-.dnapath html sub-sub-.dnapath_list html subset-.dnapath html subset-.dnapath_list html subset.dnapath_list html summarize_edges html summarize_genes html summarize_genes_for_pathway html summarize_pathways html summary.dnapath html summary.dnapath_list html symbol_to_entrez html tail.dnapath_list html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dnapath)