* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dnapath’ ...
** package ‘dnapath’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvH8TLp/R.INSTALL2d80407e0a818d/dnapath/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dnaC.cpp -o dnaC.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dnapath.so RcppExports.o dnaC.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvH8TLp/R.INSTALL2d80407e0a818d/dnapath/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvH8TLp/R.INSTALL2d80407e0a818d/dnapath/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvH8TLp/R.INSTALL2d80407e0a818d/dnapath/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-dnapath/00new/dnapath/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘dnapath’
    finding HTML links ... done
    biomart_hsapiens                        html  
    c.dnapath                               html  
    c.dnapath_list                          html  
    combine_overlapping_pathways            html  
    d_edgesC                                html  
    d_genesC                                html  
    d_pathwayC                              html  
    dna_pathway                             html  
    dnapath                                 html  
    entrez_to_symbol                        html  
    filter_pathways                         html  
    format_species_name                     html  
    get_biomart_mapping                     html  
    get_genes                               html  
    get_mean_expr_mat                       html  
    get_min_alpha                           html  
    get_networks                            html  
    get_reactome_pathways                   html  
    head.dnapath_list                       html  
    init_mart                               html  
    length.dnapath_list                     html  
    meso                                    html  
    names.dnapath                           html  
    names.dnapath_list                      html  
    p53_pathways                            html  
    plot.dnapath                            html  
    plot_pair                               html  
    print.dnapath                           html  
    print.dnapath_list                      html  
    rename_genes                            html  
    rev.dnapath_list                        html  
    run_aracne                              html  
    run_bc3net                              html  
    run_c3net                               html  
    run_clr                                 html  
    run_corr                                html  
    run_genie3                              html  
    run_glasso                              html  
    run_mrnet                               html  
    run_pcor                                html  
    run_pcor_fdr                            html  
    run_silencer                            html  
    sort.dnapath_list                       html  
    sub-.dnapath                            html  
    sub-.dnapath_list                       html  
    sub-sub-.dnapath                        html  
    sub-sub-.dnapath_list                   html  
    subset-.dnapath                         html  
    subset-.dnapath_list                    html  
    subset.dnapath_list                     html  
    summarize_edges                         html  
    summarize_genes                         html  
    summarize_genes_for_pathway             html  
    summarize_pathways                      html  
    summary.dnapath                         html  
    summary.dnapath_list                    html  
    symbol_to_entrez                        html  
    tail.dnapath_list                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dnapath)