* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dispRity’ ...
** package ‘dispRity’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGsrKzs/R.INSTALL33b1f813bc5368/dispRity/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bitwise.dist.c -o bitwise.dist.o
bitwise.dist.c: In function ‘bitwise_hamming’:
bitwise.dist.c:73:35: warning: variable ‘orders’ set but not used [-Wunused-but-set-variable]
73 | int vector1[nc], vector2[nc], orders[nc];
| ^~~~~~
bitwise.dist.c: In function ‘bitwise_manhattan’:
bitwise.dist.c:142:35: warning: variable ‘orders’ set but not used [-Wunused-but-set-variable]
142 | int vector1[nc], vector2[nc], orders[nc];
| ^~~~~~
bitwise.dist.c: In function ‘bitwise_euclidean’:
bitwise.dist.c:205:35: warning: variable ‘orders’ set but not used [-Wunused-but-set-variable]
205 | int vector1[nc], vector2[nc], orders[nc];
| ^~~~~~
bitwise.dist.c: In function ‘bitwise_mord’:
bitwise.dist.c:285:35: warning: variable ‘orders’ set but not used [-Wunused-but-set-variable]
285 | int vector1[nc], vector2[nc], orders[nc];
| ^~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c char.diff.c -o char.diff.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dispRity.so bitwise.dist.o char.diff.o registerDynamicSymbol.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGsrKzs/R.INSTALL33b1f813bc5368/dispRity/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGsrKzs/R.INSTALL33b1f813bc5368/dispRity/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGsrKzs/R.INSTALL33b1f813bc5368/dispRity/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-dispRity/00new/dispRity/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘dispRity’
finding HTML links ... done
BeckLee html
BeckLee_disparity html
Claddis.ordination html
MCMCglmm.subsets html
MCMCglmm.utilities html
add.tree html
adonis.dispRity html
apply.NA html
as.covar html
bhatt.coeff html
boot.matrix html
char.diff html
charadriiformes html
check.morpho html
chrono.subsets html
clean.data html
covar.plot html
covar.utilities html
crown.stem html
custom.subsets html
demo_data html
dispRity-package html
dispRity html
dispRity.covar.projections html
dispRity.fast html
dispRity.metric html
dispRity.per.group html
dispRity.through.time html
disparity html
distance.randtest html
dtt.dispRity html
extinction.subsets html
geomorph.ordination html
get.bin.ages html
get.contrast.matrix html
get.matrix html
get.subsets html
make.dispRity html
make.metric html
match.tip.edge html
model.test html
model.test.sim html
model.test.wrapper html
multi.ace html
null.test html
pair.plot html
pgls.dispRity html
plot.char.diff html
plot.dispRity html
print.dispRity html
random.circle html
randtest.dispRity html
reduce.matrix html
reduce.space html
remove.zero.brlen html
scale.dispRity html
select.axes html
set.root.time html
sim.morpho html
slice.tree html
slide.nodes html
sort.dispRity html
space.maker html
summary.dispRity html
test.dispRity html
test.metric html
tree.age html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dispRity)