* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dipsaus’ ...
** package ‘dipsaus’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyaWiaL/R.INSTALL26fdfa526ad8c1/dipsaus/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c forelse.cpp -o forelse.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpp_arrayShift.cpp -o rcpp_arrayShift.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpp_baselineArray.cpp -o rcpp_baselineArray.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpp_collapse.cpp -o rcpp_collapse.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpp_fastCov.cpp -o rcpp_fastCov.o
rcpp_fastCov.cpp: In member function ‘virtual void FastCov::operator()(std::size_t, std::size_t)’:
rcpp_fastCov.cpp:47:24: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   47 |     for(jj = begin; jj < end; jj++, pt_cm2++){
      |                     ~~~^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpp_median.cpp -o rcpp_median.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utils.cpp -o utils.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dipsaus.so RcppExports.o forelse.o rcpp_arrayShift.o rcpp_baselineArray.o rcpp_collapse.o rcpp_fastCov.o rcpp_median.o utils.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyaWiaL/R.INSTALL26fdfa526ad8c1/dipsaus/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyaWiaL/R.INSTALL26fdfa526ad8c1/dipsaus/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyaWiaL/R.INSTALL26fdfa526ad8c1/dipsaus/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-dipsaus/00new/dipsaus/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘dipsaus’
    finding HTML links ... done
    AbstractMap                             html  
    AbstractQueue                           html  
    PersistContainer                        html  
    actionButtonStyled                      html  
    add_to_session                          html  
    as_pipe                                 html  
    ask_or_default                          html  
    ask_yesno                               html  
    async                                   html  
    async_expr                              html  
    async_flapply                           html  
    async_works                             html  
    attached_packages                       html  
    base64-url                              html  
    base64_to_image                         html  
    base64_to_string                        html  
    baseline_array                          html  
    capture_expr                            html  
    cat2                                    html  
    check_installed_packages                html  
    clear_env                               html  
    col2hexStr                              html  
    collapse                                html  
    compoundInput2                          html  
    decorate_function                       html  
    deparse_svec                            html  
    digest2                                 html  
    dipsaus-defunct                         html  
    dipsaus-rstudio-shortcuts               html  
    do_aggregate                            html  
    do_nothing                              html  
    drop_nulls                              html  
    eval_dirty                              html  
    fancyFileInput                          html  
    fastcov2                                html  
    fastmap2                                html  
    fastquantile                            html  
    fastqueue2                              html  
    flex_div                                html  
    forelse                                 html  
    getInputBinding                         html  
    get_credential                          html  
    get_dots                                html  
    get_ip                                  html  
    get_os                                  html  
    get_ram                                 html  
    grapes-OF-grapes                        html  
    grapes-equals-greater-than-grapes       html  
    grapes-help-set-grapes                  html  
    grapes-plus-grapes                      html  
    grapes-set-help-grapes                  html  
    graphic-devices                         html  
    handler_dipsaus_progress                html  
    html_asis                               html  
    html_class                              html  
    iapply                                  html  
    is_from_namespace                       html  
    lapply_async2                           html  
    lapply_callr                            html  
    list_to_fastmap2                        html  
    list_to_fastqueue2                      html  
    lock                                    html  
    make_forked_clusters                    html  
    map                                     html  
    mask_function2                          html  
    match_calls                             html  
    mean_se                                 html  
    mem_limit2                              html  
    new_function2                           html  
    no_op                                   html  
    package_installed                       html  
    parse_svec                              html  
    print_directory_tree                    html  
    progress2                               html  
    reexports                               html  
    registerInputBinding                    html  
    restart_session                         html  
    rs_active_project                       html  
    rs_avail                                html  
    rs_edit_file                            html  
    rs_exec                                 html  
    rs_focus_console                        html  
    rs_save_all                             html  
    rs_select_path                          html  
    rs_set_repos                            html  
    rs_viewer                               html  
    screenshot                              html  
    session_uuid                            html  
    set_shiny_input                         html  
    sexp_type2                              html  
    shared_finalizer                        html  
    shift_array                             html  
    shiny_alert2                            html  
    shiny_is_running                        html  
    ste_mean                                html  
    sumsquared                              html  
    sync_shiny_inputs                       html  
    test_farg                               html  
    time_delta                              html  
    to_datauri                              html  
    to_ram_size                             html  
    updateActionButtonStyled                html  
    updateCompoundInput2                    html  
    update_fastmap2                         html  
    use_shiny_dipsaus                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dipsaus)