* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘dipsaus’ ... ** package ‘dipsaus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyaWiaL/R.INSTALL26fdfa526ad8c1/dipsaus/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c forelse.cpp -o forelse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_arrayShift.cpp -o rcpp_arrayShift.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_baselineArray.cpp -o rcpp_baselineArray.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_collapse.cpp -o rcpp_collapse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_fastCov.cpp -o rcpp_fastCov.o rcpp_fastCov.cpp: In member function ‘virtual void FastCov::operator()(std::size_t, std::size_t)’: rcpp_fastCov.cpp:47:24: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 47 | for(jj = begin; jj < end; jj++, pt_cm2++){ | ~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_median.cpp -o rcpp_median.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dipsaus.so RcppExports.o forelse.o rcpp_arrayShift.o rcpp_baselineArray.o rcpp_collapse.o rcpp_fastCov.o rcpp_median.o utils.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyaWiaL/R.INSTALL26fdfa526ad8c1/dipsaus/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyaWiaL/R.INSTALL26fdfa526ad8c1/dipsaus/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyaWiaL/R.INSTALL26fdfa526ad8c1/dipsaus/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-dipsaus/00new/dipsaus/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘dipsaus’ finding HTML links ... done AbstractMap html AbstractQueue html PersistContainer html actionButtonStyled html add_to_session html as_pipe html ask_or_default html ask_yesno html async html async_expr html async_flapply html async_works html attached_packages html base64-url html base64_to_image html base64_to_string html baseline_array html capture_expr html cat2 html check_installed_packages html clear_env html col2hexStr html collapse html compoundInput2 html decorate_function html deparse_svec html digest2 html dipsaus-defunct html dipsaus-rstudio-shortcuts html do_aggregate html do_nothing html drop_nulls html eval_dirty html fancyFileInput html fastcov2 html fastmap2 html fastquantile html fastqueue2 html flex_div html forelse html getInputBinding html get_credential html get_dots html get_ip html get_os html get_ram html grapes-OF-grapes html grapes-equals-greater-than-grapes html grapes-help-set-grapes html grapes-plus-grapes html grapes-set-help-grapes html graphic-devices html handler_dipsaus_progress html html_asis html html_class html iapply html is_from_namespace html lapply_async2 html lapply_callr html list_to_fastmap2 html list_to_fastqueue2 html lock html make_forked_clusters html map html mask_function2 html match_calls html mean_se html mem_limit2 html new_function2 html no_op html package_installed html parse_svec html print_directory_tree html progress2 html reexports html registerInputBinding html restart_session html rs_active_project html rs_avail html rs_edit_file html rs_exec html rs_focus_console html rs_save_all html rs_select_path html rs_set_repos html rs_viewer html screenshot html session_uuid html set_shiny_input html sexp_type2 html shared_finalizer html shift_array html shiny_alert2 html shiny_is_running html ste_mean html sumsquared html sync_shiny_inputs html test_farg html time_delta html to_datauri html to_ram_size html updateActionButtonStyled html updateCompoundInput2 html update_fastmap2 html use_shiny_dipsaus html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dipsaus)