* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘detectRUNS’ ...
** package ‘detectRUNS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7A1SdX/R.INSTALL2ed10e73873a7f/detectRUNS/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c functions.cpp -o functions.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o detectRUNS.so RcppExports.o functions.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7A1SdX/R.INSTALL2ed10e73873a7f/detectRUNS/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7A1SdX/R.INSTALL2ed10e73873a7f/detectRUNS/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7A1SdX/R.INSTALL2ed10e73873a7f/detectRUNS/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-detectRUNS/00new/detectRUNS/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘detectRUNS’
    finding HTML links ... done
    Froh_inbreeding                         html  
    Froh_inbreedingClass                    html  
    chromosomeLength                        html  
    consecutiveRUNS.run                     html  
    consecutiveRuns                         html  
    consecutiveRunsCpp                      html  
    createRUNdf                             html  
    findOppositeAndMissing                  html  
    genoConvert                             html  
    genoConvertCpp                          html  
    heteroZygotTest                         html  
    heteroZygotTestCpp                      html  
    homoZygotTest                           html  
    homoZygotTestCpp                        html  
    pedConvertCpp                           html  
    plot_DistributionRuns                   html  
    plot_InbreedingChr                      html  
    plot_PatternRuns                        html  
    plot_Runs                               html  
    plot_SnpsInRuns                         html  
    plot_StackedRuns                        html  
    plot_ViolinRuns                         html  
    plot_manhattanRuns                      html  
    readExternalRuns                        html  
    readPOPCpp                              html  
    reorderDF                               html  
    slidingRUNS.run                         html  
    slidingRuns                             html  
    slidingWindow                           html  
    slidingWindowCpp                        html  
    snpInRun                                html  
    snpInRunCpp                             html  
    snpInsideRuns                           html  
    snpInsideRunsCpp                        html  
    summaryRuns                             html  
    tableRuns                               html  
    writeRUN                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (detectRUNS)