* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘dendextend’ ... ** package ‘dendextend’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘dendextend’ finding HTML links ... done Bk html Bk_permutations html Bk_plot html DendSer.dendrogram html FM_index html FM_index_R html FM_index_permutation html all.equal.dendrogram html all_couple_rotations_at_k html all_unique html as.dendlist html as.phylo.dendrogram html as_hclust_fixed html assign_dendextend_options html assign_values_to_branches_edgePar html assign_values_to_leaves_edgePar html assign_values_to_leaves_nodePar html assign_values_to_nodes_nodePar html bakers_gamma_for_2_k_matrix html branches_attr_by_clusters html branches_attr_by_labels html branches_attr_by_lists html circlize_dendrogram html click_rotate html collapse_branch html collapse_labels html color_branches html color_labels html color_unique_labels html colored_bars html colored_dots html common_subtrees_clusters html cor.dendlist html cor_FM_index html cor_bakers_gamma html cor_common_nodes html cor_cophenetic html count_terminal_nodes html cut_lower_fun html cutree-methods html cutree_1h.dendrogram html cutree_1k.dendrogram html dend_diff html dendextend-package html dendextend_options html dendlist html depth html dist.dendlist html dist_long html distinct_edges html duplicate_leaf html entanglement html fac2num html find_dend html find_dendrogram html find_k html fix_members_attr.dendrogram html flatten.dendrogram html flip_leaves html get_branches_heights html get_childrens_heights html get_leaves_attr html get_leaves_branches_attr html get_leaves_branches_col html get_leaves_edgePar html get_leaves_nodePar html get_nodes_attr html get_nodes_xy html get_root_branches_attr html get_subdendrograms html ggdend html hang.dendrogram html has_component_in_attribute html heights_per_k.dendrogram html highlight_branches html highlight_distinct_edges html identify.dendrogram html intersect_trees html is.natural.number html is_null_list html is_some_class html khan html labels-assign html labels_cex html labels_colors html ladderize html leaf_Colors html lowest_common_branch html match_order_by_labels html match_order_dendrogram_by_old_order html na_locf html nleaves html nnodes html noded_with_condition html order.dendrogram-assign html order.hclust html partition_leaves html plot_horiz.dendrogram html prune html prune_common_subtrees.dendlist html prune_leaf html pvclust_edges html pvclust_show_signif html pvclust_show_signif_gradient html pvrect2 html raise.dendrogram html rank_branches html rank_order.dendrogram html rank_values_with_clusters html rect.dendrogram html reexports html reindex_dend html remove_branches_edgePar html remove_leaves_nodePar html remove_nodes_nodePar html rllply html rotate html rotate_DendSer html sample.dendrogram html seriate_dendrogram html set html set_labels html shuffle html sort_2_clusters_vectors html sort_dist_mat html sort_levels_values html tanglegram html theme_dendro html unbranch html unclass_dend html untangle html untangle_DendSer html untangle_random_search html untangle_step_rotate_1side html untangle_step_rotate_2side html untangle_step_rotate_both_side html which_leaf html which_node html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dendextend)