* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘ddpcr’ ... ** package ‘ddpcr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘ddpcr’ finding HTML links ... done WELL_ID_REGEX html analysis_complete html analyze html bind_df_ends html calc_negative_freq_simple html calculate_concentration html calculate_concentration_single html calculate_neg_freq_single html calculate_negative_freqs html capitalize html cat0 html check_step html classify_droplets html classify_droplets.pnpp_experiment html classify_droplets_single html classify_droplets_single.pnpp_experiment html classify_thresholds html cluster html cluster_name html clusters html col_to_num html custom_thresholds html ddpcr-package html ddpcr_plate html define_clusters html define_clusters.custom_thresholds html define_clusters.ddpcr_plate html define_clusters.pnpp_experiment html define_params html define_params.custom_thresholds html define_params.ddpcr_plate html define_params.fam_positive_pnpp html define_params.hex_positive_pnpp html define_params.pnpp_experiment html define_params.wildtype_mutant_pnpp html define_steps html define_steps.custom_thresholds html define_steps.ddpcr_plate html define_steps.pnpp_experiment html diff.point2d html err_msg html fam_positive_pnpp html get_col html get_empty_cutoff html get_empty_cutoff.ddpcr_plate html get_empty_cutoff.pnpp_experiment html get_filled_border html get_filled_drops html get_outlier_cutoff html get_outlier_cutoff.ddpcr_plate html get_row html get_single_well html get_wells_btwn html grapes-btwn-grapes html grapes-greater-than-grapes html has_signif_negative_cluster html has_step html hex_positive_pnpp html is_dir html is_dirty html is_empty_plate html is_file html is_range html is_well_success html is_well_success.ddpcr_plate html is_well_success.pnpp_experiment html launch html load_plate html local_maxima html local_minima html lol_to_df html mark_clusters html merge_dfs_overwrite_col html meta_var_name html move_back html move_front html msg html name html named_vec_to_df html new_plate html next_step html normalize_to_rds html num_to_col html num_to_row html other_dim html params html parent_plate_type html parent_plate_type.ddpcr_plate html parent_plate_type.default html parent_plate_type.fam_positive_pnpp html parent_plate_type.hex_positive_pnpp html parent_plate_type.wildtype_mutant_pnpp html plate_data-set html plate_data html plate_meta-set html plate_meta html plate_types html plot.custom_thresholds html plot.ddpcr_plate html plot.pnpp_experiment html plot.wildtype_mutant_pnpp html pnpp_experiment html point2d html positive_dim html positive_dim_var html positive_name html print.ddpcr_plate html quiet html range_list_to_vec html range_to_endpoints html range_to_seq html reclassify_droplets html reclassify_droplets.pnpp_experiment html reclassify_droplets_single html reclassify_droplets_single.pnpp_experiment html remove_empty html remove_empty.ddpcr_plate html remove_empty.pnpp_experiment html remove_failures html remove_failures.ddpcr_plate html remove_outliers html remove_outliers.ddpcr_plate html reset html row_to_num html sample_data html save_plate html set_default_params html status html step html step_begin html step_end html step_name html steps html subset.ddpcr_plate html thresholds html type html unanalyzed_clusters html variable_dim html variable_dim_var html warn_msg html well_info html wells_mutant html wells_negative html wells_positive html wells_success html wells_used html wells_wildtype html wildtype_mutant_pnpp html x_threshold html x_var html y_threshold html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ddpcr)