* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘dataquieR’ ... ** package ‘dataquieR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Error in lambda(c("Missing the package(s) %s to %s.", "Install with install.packages(%s).", : object '.called_in_pipeline' not found ** help *** installing help indices converting help for package ‘dataquieR’ finding HTML links ... done API_VERSION html ASSOCIATION_DIRECTION html ASSOCIATION_FORM html ASSOCIATION_METRIC html ASSOCIATION_RANGE html CHECK_ID html CHECK_LABEL html CODE_CLASSES html CODE_LIST_TABLE html CODE_ORDER html CONTRADICTION_TERM html CONTRADICTION_TYPE html DATA_PREPARATION html DATA_TYPES html DATA_TYPES_OF_R_TYPE html DF_CODE html DF_ELEMENT_COUNT html DF_ID_REF_TABLE html DF_ID_VARS html DF_NAME html DF_RECORD_CHECK html DF_RECORD_COUNT html DF_UNIQUE_ID html DF_UNIQUE_ROWS 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as.data.frame.dataquieR_resultset html as.list.dataquieR_resultset html as.list.dataquieR_resultset2 html cash-.dataquieR_result html cash-.dataquieR_resultset2 html cash-set-.dataquieR_resultset2 html check_table html com_item_missingness html com_qualified_item_missingness html com_qualified_segment_missingness html com_segment_missingness html com_unit_missingness html con_contradictions html con_contradictions_redcap html con_inadmissible_categorical html con_inadmissible_vocabulary html con_limit_deviations html contradiction_functions html contradiction_functions_descriptions html dataquieR.CONDITIONS_LEVEL_TRHESHOLD html dataquieR.CONDITIONS_WITH_STACKTRACE html dataquieR.ELEMENT_MISSMATCH_CHECKTYPE html dataquieR.ERRORS_WITH_CALLER html dataquieR.GAM_for_LOESS html dataquieR.MAX_LABEL_LEN html dataquieR.MAX_VALUE_LABEL_LEN html dataquieR.MESSAGES_WITH_CALLER html dataquieR.MULTIVARIATE_OUTLIER_CHECK html dataquieR html dataquieR.VALUE_LABELS_htmlescaped html 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html util_standardise_ordinal_codes html util_startsWith_prefix._or_equals_prefix html util_stop_if_not html util_storr_factory html util_storr_object html util_string_is_not_categorical html util_study_var2factor html util_sub_string_left_from_. html util_sub_string_right_from_. html util_suppress_output html util_suppress_warnings html util_table_of_vct html util_table_rotator html util_translate html util_translate_indicator_metrics html util_tukey html util_undisclose html util_unit2baseunit html util_user_hint html util_validate_known_meta html util_validate_missing_lists html util_validate_report_summary_table html util_varcomp_robust html util_variable_references html util_verify_encoding html util_verify_names html util_view_file html util_warn_unordered html util_warning html value-slash-missing-lists html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dataquieR)