* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dataquieR’ ...
** package ‘dataquieR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘dataquieR’
finding HTML links ... done
API_VERSION html
ASSOCIATION_DIRECTION html
ASSOCIATION_FORM html
ASSOCIATION_METRIC html
ASSOCIATION_RANGE html
CAN_THIS_BE_REMOVED_util_combine_missing_lists
html
CHECK_ID html
CHECK_LABEL html
CONTRADICTION_TERM html
CONTRADICTION_TYPE html
DATA_PREPARATION html
DATA_TYPES html
DATA_TYPES_OF_R_TYPE html
DF_ELEMENT_COUNT html
DF_ID_REF_TABLE html
DF_ID_VARS html
DF_NAME html
DF_RECORD_CHECK html
DF_RECORD_COUNT html
DF_UNIQUE_ID html
DF_UNIQUE_ROWS html
DISTRIBUTIONS html
Descriptor html
GOLDSTANDARD html
Indicator html
MULTIVARIATE_OUTLIER_CHECKTYPE html
N_RULES html
REL_VAL html
SCALE_LEVELS html
SEGMENT_ID_REF_TABLE html
SEGMENT_ID_TABLE html
SEGMENT_ID_VARS html
SEGMENT_MISS html
SEGMENT_PART_VARS html
SEGMENT_RECORD_CHECK html
SEGMENT_RECORD_COUNT html
SEGMENT_UNIQUE_ROWS html
SPLIT_CHAR html
UNITS html
UNIT_IS_COUNT html
UNIT_PREFIXES html
UNIT_SOURCES html
UNIVARIATE_OUTLIER_CHECKTYPE html
VARATT_REQUIRE_LEVELS html
VARIABLE_LIST html
VARIABLE_ROLES html
WELL_KNOWN_META_VARIABLE_NAMES html
acc_distributions html
finding level-2 HTML links ... done
acc_distributions_loc html
acc_distributions_loc_ecdf html
acc_distributions_only html
acc_distributions_only_ecdf html
acc_distributions_prop html
acc_end_digits html
acc_loess html
acc_margins html
acc_multivariate_outlier html
acc_robust_univariate_outlier html
acc_shape_or_scale html
acc_univariate_outlier html
acc_varcomp html
as.data.frame.dataquieR_resultset html
as.list.dataquieR_resultset html
cash-.dataquieR_result html
cause_label_df html
check_table html
com_item_missingness html
com_qualified_item_missingness html
com_qualified_segment_missingness html
com_segment_missingness html
com_unit_missingness html
con_contradictions html
con_contradictions_redcap html
con_inadmissible_categorical html
con_limit_deviations html
contradiction_functions html
contradiction_functions_descriptions html
dataquieR html
dataquieR_resultset html
dataquieR_resultset2 html
dataquieR_resultset_verify html
des_scatterplot_matrix html
des_summary html
dim.dataquieR_resultset2 html
dimensions html
dimnames.dataquieR_resultset2 html
dims html
dot-.indicator_or_descriptor html
dot-.manual html
dot-get_internal_api html
dot-util_internal_normalize_meta_data html
dot-variable_arg_roles html
dq_report html
dq_report2 html
dq_report_by html
html_dependency_clipboard html
html_dependency_dataquieR html
html_dependency_report_dt html
html_dependency_tippy html
html_dependency_vert_dt html
int_all_datastructure_dataframe html
int_all_datastructure_segment html
int_datatype_matrix html
int_duplicate_content html
int_duplicate_ids html
int_part_vars_structure html
int_sts_element_dataframe html
int_sts_element_segment html
int_unexp_elements html
int_unexp_records_dataframe html
int_unexp_records_segment html
int_unexp_records_set html
menu_env-menu html
menu_env html
menu_env_drop_down html
menu_env_menu_entry html
meta_data html
meta_data_cross html
meta_data_dataframe html
meta_data_env html
meta_data_env_co_vars html
meta_data_env_criteria html
meta_data_env_group_vars html
meta_data_env_id_vars html
meta_data_env_n_rules html
meta_data_env_time_vars html
meta_data_segment html
nres html
pipeline_recursive_result html
pipeline_vectorized html
plot.dataquieR_summary html
prep_add_cause_label_df html
prep_add_data_frames html
prep_add_missing_codes html
prep_add_to_meta html
prep_apply_coding html
prep_check_for_dataquieR_updates html
prep_check_meta_data_dataframe html
prep_check_meta_data_segment html
prep_check_meta_names html
prep_clean_labels html
prep_combine_report_summaries html
prep_create_meta html
prep_create_meta_data_file html
prep_datatype_from_data html
prep_deparse_assignments html
prep_dq_data_type_of html
prep_expand_codes html
prep_extract_cause_label_df html
prep_extract_classes_by_functions html
prep_extract_summary html
prep_extract_summary.dataquieR_result html
prep_extract_summary.dataquieR_resultset2
html
prep_get_data_frame html
prep_get_labels html
prep_get_user_name html
prep_link_escape html
prep_list_dataframes html
prep_load_folder_with_metadata html
prep_load_report html
prep_load_workbook_like_file html
prep_map_labels html
prep_merge_study_data html
prep_meta_data_v1_to_item_level_meta_data
html
prep_min_obs_level html
prep_pmap html
prep_prepare_dataframes html
prep_purge_data_frame_cache html
prep_render_pie_chart_from_summaryclasses_ggplot2
html
prep_render_pie_chart_from_summaryclasses_plotly
html
prep_save_report html
prep_scalelevel_from_data_and_metadata
html
prep_study2meta html
prep_summary_to_classes html
prep_title_escape html
prep_valuelabels_from_data html
print.ReportSummaryTable html
print.dataquieR_result html
print.dataquieR_resultset html
print.dataquieR_resultset2 html
print.dataquieR_summary html
print.interval html
pro_applicability_matrix html
rbind.ReportSummaryTable html
resnames html
resnames.dataquieR_resultset2 html
study_data html
sub-.dataquieR_result html
sub-.dataquieR_resultset2 html
sub-sub-.dataquieR_result html
summary.dataquieR_resultset html
summary.dataquieR_resultset2 html
util_3SD html
util_abbreviate html
util_adjust_data_type html
util_adjust_geom_text_for_plotly html
util_alias2caption html
util_all_ind_functions html
util_all_intro_vars_for_rv html
util_all_is_integer html
util_anytime_installed html
util_app_cd html
util_app_con_contradictions_redcap html
util_app_dc html
util_app_dl html
util_app_ed html
util_app_hl html
util_app_iac html
util_app_iav html
util_app_im html
util_app_loess html
util_app_mar html
util_app_mol html
util_app_ol html
util_app_sl html
util_app_sm html
util_app_sos html
util_app_vc html
util_as_cat html
util_as_numeric html
util_as_valid_missing_codes html
util_assign_levlabs html
util_attach_attr html
util_bQuote html
util_backtickQuote html
util_cast_off html
util_check_data_type html
util_check_group_levels html
util_check_one_unique_value html
util_cll_nm2fkt_nm html
util_col2rgb html
util_col_description html
util_collapse_msgs html
util_combine_res html
util_compare_meta_with_study html
util_compress_ggplots_in_res html
util_compute_SE_skewness html
util_compute_kurtosis html
util_compute_skewness html
util_condition_constructor_factory html
util_conversion_stable html
util_coord_flip html
util_copy_all_deps html
util_correct_variable_use html
util_count_NA html
util_count_expected_observations html
util_create_page_file html
util_data_type_conversion html
util_deparse1 html
util_detect_cores html
util_dichotomize html
util_dist_selection html
util_ds1_eval_env html
util_empty html
util_ensure_character html
util_ensure_in html
util_ensure_label html
util_ensure_suggested html
util_error html
util_eval_rule html
util_eval_to_dataquieR_result html
util_evaluate_calls html
util_expect_data_frame html
util_expect_scalar html
util_extract_all_ids html
util_extract_indicator_metrics html
util_extract_matches html
util_filter_missing_list_table_for_rv html
util_filter_names_by_regexps html
util_find_external_functions_in_stacktrace
html
util_find_first_externally_called_functions_in_stacktrace
html
util_find_free_missing_code html
util_find_indicator_function_in_callers
html
util_find_var_by_meta html
util_first_row_to_colnames html
util_fix_rstudio_bugs html
util_float_index_menu html
util_formattable html
util_function_description html
util_generate_anchor_link html
util_generate_anchor_tag html
util_generate_calls html
util_generate_calls_for_function html
util_generate_pages_from_report html
util_generate_table_indicators_descriptors
html
util_get_category_for_result html
util_get_code_list html
util_get_colors html
util_get_concept_info html
util_get_fg_color html
util_get_html_cell_for_result html
util_get_labels_grading_class html
util_get_message_for_result html
util_get_redcap_rule_env html
util_get_rule_sets html
util_get_ruleset_formats html
util_get_thresholds html
util_get_var_att_names_of_level html
util_get_vars_in_segment html
util_gg_var_label html
util_heatmap_1th html
util_hide_file_windows html
util_html_attr_quote_escape html
util_html_for_dims html
util_html_for_var html
util_html_table html
util_hubert html
util_iframe_it_if_needed html
util_int_duplicate_content_dataframe html
util_int_duplicate_content_segment html
util_int_duplicate_ids_dataframe html
util_int_duplicate_ids_segment html
util_int_unexp_records_set_dataframe html
util_int_unexp_records_set_segment html
util_interpret_limits html
util_interpret_range html
util_is_integer html
util_is_na_0_empty_or_false html
util_is_numeric_in html
util_is_valid_missing_codes html
util_load_manual html
util_looks_like_missing html
util_make_data_slot_from_table_slot html
util_make_function html
util_map_all html
util_map_by_largest_prefix html
util_map_labels html
util_match_arg html
util_melt_summary html
util_merge_data_frame_list html
util_message html
util_no_value_labels html
util_normalize_cross_item html
util_observation_expected html
util_observations_in_subgroups html
util_online_ref html
util_only_NAs html
util_open_in_excel html
util_optimize_histogram_bins html
util_order_by_order html
util_par_pmap html
util_parse_assignments html
util_parse_interval html
util_parse_redcap_rule html
util_plot_figure_no_plotly html
util_plot_figure_plotly html
util_plot_svg_to_uri html
util_prep_location_check html
util_prep_proportion_check html
util_pretty_print html
util_pretty_vector_string html
util_rbind html
util_really_rstudio html
util_recode html
util_remove_empty_rows html
util_remove_na_records html
util_render_table_dataquieR_summary html
util_replace_codes_by_NA html
util_replace_hard_limit_violations html
util_rio_import html
util_rio_import_list html
util_set_dQuoteString html
util_set_sQuoteString html
util_set_size html
util_setup_rstudio_job html
util_sigmagap html
util_sort_by_order html
util_standardise_ordinal_codes html
util_startsWith_prefix._or_equals_prefix
html
util_stop_if_not html
util_string_is_not_categorical html
util_study_var2factor html
util_sub_string_left_from_. html
util_sub_string_right_from_. html
util_suppress_output html
util_table_of_vct html
util_table_rotator html
util_translate_indicator_metrics html
util_tukey html
util_unit2baseunit html
util_user_hint html
util_validate_known_meta html
util_validate_missing_lists html
util_variable_references html
util_view_file html
util_warn_unordered html
util_warning html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
** testing if installed package can be loaded from final location
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
** testing if installed package keeps a record of temporary installation path
* DONE (dataquieR)