* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dataquieR’ ...
** package ‘dataquieR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘dataquieR’
    finding HTML links ... done
    API_VERSION                             html  
    ASSOCIATION_DIRECTION                   html  
    ASSOCIATION_FORM                        html  
    ASSOCIATION_METRIC                      html  
    ASSOCIATION_RANGE                       html  
    CAN_THIS_BE_REMOVED_util_combine_missing_lists
                                            html  
    CHECK_ID                                html  
    CHECK_LABEL                             html  
    CONTRADICTION_TERM                      html  
    CONTRADICTION_TYPE                      html  
    DATA_PREPARATION                        html  
    DATA_TYPES                              html  
    DATA_TYPES_OF_R_TYPE                    html  
    DF_ELEMENT_COUNT                        html  
    DF_ID_REF_TABLE                         html  
    DF_ID_VARS                              html  
    DF_NAME                                 html  
    DF_RECORD_CHECK                         html  
    DF_RECORD_COUNT                         html  
    DF_UNIQUE_ID                            html  
    DF_UNIQUE_ROWS                          html  
    DISTRIBUTIONS                           html  
    Descriptor                              html  
    GOLDSTANDARD                            html  
    Indicator                               html  
    MULTIVARIATE_OUTLIER_CHECKTYPE          html  
    N_RULES                                 html  
    REL_VAL                                 html  
    SCALE_LEVELS                            html  
    SEGMENT_ID_REF_TABLE                    html  
    SEGMENT_ID_TABLE                        html  
    SEGMENT_ID_VARS                         html  
    SEGMENT_MISS                            html  
    SEGMENT_PART_VARS                       html  
    SEGMENT_RECORD_CHECK                    html  
    SEGMENT_RECORD_COUNT                    html  
    SEGMENT_UNIQUE_ROWS                     html  
    SPLIT_CHAR                              html  
    UNITS                                   html  
    UNIT_IS_COUNT                           html  
    UNIT_PREFIXES                           html  
    UNIT_SOURCES                            html  
    UNIVARIATE_OUTLIER_CHECKTYPE            html  
    VARATT_REQUIRE_LEVELS                   html  
    VARIABLE_LIST                           html  
    VARIABLE_ROLES                          html  
    WELL_KNOWN_META_VARIABLE_NAMES          html  
    acc_distributions                       html  
    finding level-2 HTML links ... done

    acc_distributions_loc                   html  
    acc_distributions_loc_ecdf              html  
    acc_distributions_only                  html  
    acc_distributions_only_ecdf             html  
    acc_distributions_prop                  html  
    acc_end_digits                          html  
    acc_loess                               html  
    acc_margins                             html  
    acc_multivariate_outlier                html  
    acc_robust_univariate_outlier           html  
    acc_shape_or_scale                      html  
    acc_univariate_outlier                  html  
    acc_varcomp                             html  
    as.data.frame.dataquieR_resultset       html  
    as.list.dataquieR_resultset             html  
    cash-.dataquieR_result                  html  
    cause_label_df                          html  
    check_table                             html  
    com_item_missingness                    html  
    com_qualified_item_missingness          html  
    com_qualified_segment_missingness       html  
    com_segment_missingness                 html  
    com_unit_missingness                    html  
    con_contradictions                      html  
    con_contradictions_redcap               html  
    con_inadmissible_categorical            html  
    con_limit_deviations                    html  
    contradiction_functions                 html  
    contradiction_functions_descriptions    html  
    dataquieR                               html  
    dataquieR_resultset                     html  
    dataquieR_resultset2                    html  
    dataquieR_resultset_verify              html  
    des_scatterplot_matrix                  html  
    des_summary                             html  
    dim.dataquieR_resultset2                html  
    dimensions                              html  
    dimnames.dataquieR_resultset2           html  
    dims                                    html  
    dot-.indicator_or_descriptor            html  
    dot-.manual                             html  
    dot-get_internal_api                    html  
    dot-util_internal_normalize_meta_data   html  
    dot-variable_arg_roles                  html  
    dq_report                               html  
    dq_report2                              html  
    dq_report_by                            html  
    html_dependency_clipboard               html  
    html_dependency_dataquieR               html  
    html_dependency_report_dt               html  
    html_dependency_tippy                   html  
    html_dependency_vert_dt                 html  
    int_all_datastructure_dataframe         html  
    int_all_datastructure_segment           html  
    int_datatype_matrix                     html  
    int_duplicate_content                   html  
    int_duplicate_ids                       html  
    int_part_vars_structure                 html  
    int_sts_element_dataframe               html  
    int_sts_element_segment                 html  
    int_unexp_elements                      html  
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    int_unexp_records_segment               html  
    int_unexp_records_set                   html  
    menu_env-menu                           html  
    menu_env                                html  
    menu_env_drop_down                      html  
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    meta_data_dataframe                     html  
    meta_data_env                           html  
    meta_data_env_co_vars                   html  
    meta_data_env_criteria                  html  
    meta_data_env_group_vars                html  
    meta_data_env_id_vars                   html  
    meta_data_env_n_rules                   html  
    meta_data_env_time_vars                 html  
    meta_data_segment                       html  
    nres                                    html  
    pipeline_recursive_result               html  
    pipeline_vectorized                     html  
    plot.dataquieR_summary                  html  
    prep_add_cause_label_df                 html  
    prep_add_data_frames                    html  
    prep_add_missing_codes                  html  
    prep_add_to_meta                        html  
    prep_apply_coding                       html  
    prep_check_for_dataquieR_updates        html  
    prep_check_meta_data_dataframe          html  
    prep_check_meta_data_segment            html  
    prep_check_meta_names                   html  
    prep_clean_labels                       html  
    prep_combine_report_summaries           html  
    prep_create_meta                        html  
    prep_create_meta_data_file              html  
    prep_datatype_from_data                 html  
    prep_deparse_assignments                html  
    prep_dq_data_type_of                    html  
    prep_expand_codes                       html  
    prep_extract_cause_label_df             html  
    prep_extract_classes_by_functions       html  
    prep_extract_summary                    html  
    prep_extract_summary.dataquieR_result   html  
    prep_extract_summary.dataquieR_resultset2
                                            html  
    prep_get_data_frame                     html  
    prep_get_labels                         html  
    prep_get_user_name                      html  
    prep_link_escape                        html  
    prep_list_dataframes                    html  
    prep_load_folder_with_metadata          html  
    prep_load_report                        html  
    prep_load_workbook_like_file            html  
    prep_map_labels                         html  
    prep_merge_study_data                   html  
    prep_meta_data_v1_to_item_level_meta_data
                                            html  
    prep_min_obs_level                      html  
    prep_pmap                               html  
    prep_prepare_dataframes                 html  
    prep_purge_data_frame_cache             html  
    prep_render_pie_chart_from_summaryclasses_ggplot2
                                            html  
    prep_render_pie_chart_from_summaryclasses_plotly
                                            html  
    prep_save_report                        html  
    prep_scalelevel_from_data_and_metadata
                                            html  
    prep_study2meta                         html  
    prep_summary_to_classes                 html  
    prep_title_escape                       html  
    prep_valuelabels_from_data              html  
    print.ReportSummaryTable                html  
    print.dataquieR_result                  html  
    print.dataquieR_resultset               html  
    print.dataquieR_resultset2              html  
    print.dataquieR_summary                 html  
    print.interval                          html  
    pro_applicability_matrix                html  
    rbind.ReportSummaryTable                html  
    resnames                                html  
    resnames.dataquieR_resultset2           html  
    study_data                              html  
    sub-.dataquieR_result                   html  
    sub-.dataquieR_resultset2               html  
    sub-sub-.dataquieR_result               html  
    summary.dataquieR_resultset             html  
    summary.dataquieR_resultset2            html  
    util_3SD                                html  
    util_abbreviate                         html  
    util_adjust_data_type                   html  
    util_adjust_geom_text_for_plotly        html  
    util_alias2caption                      html  
    util_all_ind_functions                  html  
    util_all_intro_vars_for_rv              html  
    util_all_is_integer                     html  
    util_anytime_installed                  html  
    util_app_cd                             html  
    util_app_con_contradictions_redcap      html  
    util_app_dc                             html  
    util_app_dl                             html  
    util_app_ed                             html  
    util_app_hl                             html  
    util_app_iac                            html  
    util_app_iav                            html  
    util_app_im                             html  
    util_app_loess                          html  
    util_app_mar                            html  
    util_app_mol                            html  
    util_app_ol                             html  
    util_app_sl                             html  
    util_app_sm                             html  
    util_app_sos                            html  
    util_app_vc                             html  
    util_as_cat                             html  
    util_as_numeric                         html  
    util_as_valid_missing_codes             html  
    util_assign_levlabs                     html  
    util_attach_attr                        html  
    util_bQuote                             html  
    util_backtickQuote                      html  
    util_cast_off                           html  
    util_check_data_type                    html  
    util_check_group_levels                 html  
    util_check_one_unique_value             html  
    util_cll_nm2fkt_nm                      html  
    util_col2rgb                            html  
    util_col_description                    html  
    util_collapse_msgs                      html  
    util_combine_res                        html  
    util_compare_meta_with_study            html  
    util_compress_ggplots_in_res            html  
    util_compute_SE_skewness                html  
    util_compute_kurtosis                   html  
    util_compute_skewness                   html  
    util_condition_constructor_factory      html  
    util_conversion_stable                  html  
    util_coord_flip                         html  
    util_copy_all_deps                      html  
    util_correct_variable_use               html  
    util_count_NA                           html  
    util_count_expected_observations        html  
    util_create_page_file                   html  
    util_data_type_conversion               html  
    util_deparse1                           html  
    util_detect_cores                       html  
    util_dichotomize                        html  
    util_dist_selection                     html  
    util_ds1_eval_env                       html  
    util_empty                              html  
    util_ensure_character                   html  
    util_ensure_in                          html  
    util_ensure_label                       html  
    util_ensure_suggested                   html  
    util_error                              html  
    util_eval_rule                          html  
    util_eval_to_dataquieR_result           html  
    util_evaluate_calls                     html  
    util_expect_data_frame                  html  
    util_expect_scalar                      html  
    util_extract_all_ids                    html  
    util_extract_indicator_metrics          html  
    util_extract_matches                    html  
    util_filter_missing_list_table_for_rv   html  
    util_filter_names_by_regexps            html  
    util_find_external_functions_in_stacktrace
                                            html  
    util_find_first_externally_called_functions_in_stacktrace
                                            html  
    util_find_free_missing_code             html  
    util_find_indicator_function_in_callers
                                            html  
    util_find_var_by_meta                   html  
    util_first_row_to_colnames              html  
    util_fix_rstudio_bugs                   html  
    util_float_index_menu                   html  
    util_formattable                        html  
    util_function_description               html  
    util_generate_anchor_link               html  
    util_generate_anchor_tag                html  
    util_generate_calls                     html  
    util_generate_calls_for_function        html  
    util_generate_pages_from_report         html  
    util_generate_table_indicators_descriptors
                                            html  
    util_get_category_for_result            html  
    util_get_code_list                      html  
    util_get_colors                         html  
    util_get_concept_info                   html  
    util_get_fg_color                       html  
    util_get_html_cell_for_result           html  
    util_get_labels_grading_class           html  
    util_get_message_for_result             html  
    util_get_redcap_rule_env                html  
    util_get_rule_sets                      html  
    util_get_ruleset_formats                html  
    util_get_thresholds                     html  
    util_get_var_att_names_of_level         html  
    util_get_vars_in_segment                html  
    util_gg_var_label                       html  
    util_heatmap_1th                        html  
    util_hide_file_windows                  html  
    util_html_attr_quote_escape             html  
    util_html_for_dims                      html  
    util_html_for_var                       html  
    util_html_table                         html  
    util_hubert                             html  
    util_iframe_it_if_needed                html  
    util_int_duplicate_content_dataframe    html  
    util_int_duplicate_content_segment      html  
    util_int_duplicate_ids_dataframe        html  
    util_int_duplicate_ids_segment          html  
    util_int_unexp_records_set_dataframe    html  
    util_int_unexp_records_set_segment      html  
    util_interpret_limits                   html  
    util_interpret_range                    html  
    util_is_integer                         html  
    util_is_na_0_empty_or_false             html  
    util_is_numeric_in                      html  
    util_is_valid_missing_codes             html  
    util_load_manual                        html  
    util_looks_like_missing                 html  
    util_make_data_slot_from_table_slot     html  
    util_make_function                      html  
    util_map_all                            html  
    util_map_by_largest_prefix              html  
    util_map_labels                         html  
    util_match_arg                          html  
    util_melt_summary                       html  
    util_merge_data_frame_list              html  
    util_message                            html  
    util_no_value_labels                    html  
    util_normalize_cross_item               html  
    util_observation_expected               html  
    util_observations_in_subgroups          html  
    util_online_ref                         html  
    util_only_NAs                           html  
    util_open_in_excel                      html  
    util_optimize_histogram_bins            html  
    util_order_by_order                     html  
    util_par_pmap                           html  
    util_parse_assignments                  html  
    util_parse_interval                     html  
    util_parse_redcap_rule                  html  
    util_plot_figure_no_plotly              html  
    util_plot_figure_plotly                 html  
    util_plot_svg_to_uri                    html  
    util_prep_location_check                html  
    util_prep_proportion_check              html  
    util_pretty_print                       html  
    util_pretty_vector_string               html  
    util_rbind                              html  
    util_really_rstudio                     html  
    util_recode                             html  
    util_remove_empty_rows                  html  
    util_remove_na_records                  html  
    util_render_table_dataquieR_summary     html  
    util_replace_codes_by_NA                html  
    util_replace_hard_limit_violations      html  
    util_rio_import                         html  
    util_rio_import_list                    html  
    util_set_dQuoteString                   html  
    util_set_sQuoteString                   html  
    util_set_size                           html  
    util_setup_rstudio_job                  html  
    util_sigmagap                           html  
    util_sort_by_order                      html  
    util_standardise_ordinal_codes          html  
    util_startsWith_prefix._or_equals_prefix
                                            html  
    util_stop_if_not                        html  
    util_string_is_not_categorical          html  
    util_study_var2factor                   html  
    util_sub_string_left_from_.             html  
    util_sub_string_right_from_.            html  
    util_suppress_output                    html  
    util_table_of_vct                       html  
    util_table_rotator                      html  
    util_translate_indicator_metrics        html  
    util_tukey                              html  
    util_unit2baseunit                      html  
    util_user_hint                          html  
    util_validate_known_meta                html  
    util_validate_missing_lists             html  
    util_variable_references                html  
    util_view_file                          html  
    util_warn_unordered                     html  
    util_warning                            html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
** testing if installed package can be loaded from final location
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
Call `prep_check_for_dataquieR_updates()` to install all suggested packages
** testing if installed package keeps a record of temporary installation path
* DONE (dataquieR)