* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dataone’ ...
** package ‘dataone’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘dataone’
    finding HTML links ... done
    AbstractTableDescriber-class            html  
    AuthenticationManager-class             html  
    AuthenticationManager                   html  
    CNode-class                             html  
    CNode                                   html  
    CertificateManager-class                html  
    CertificateManager                      html  
    D1Client-class                          html  
    D1Client-initialize                     html  
    D1Client                                html  
    D1Node-class                            html  
    D1Node-initialize                       html  
    D1Node                                  html  
    D1Object-class                          html  
    D1Object-initialize                     html  
    D1Object                                html  
    EMLParser-class                         html  
    EMLParser                               html  
    MNode-class                             html  
    MNode                                   html  
    addData                                 html  
    archive                                 html  
    asDataFrame                             html  
    auth_delete                             html  
    auth_get                                html  
    auth_head                               html  
    auth_post                               html  
    auth_put                                html  
    auth_put_post_delete                    html  
    canRead                                 html  
    convert.csv                             html  
    createD1Object                          html  
    createDataPackage                       html  
    createObject                            html  
    d1IdentifierSearch                      html  
    d1SolrQuery                             html  
    d1_errors                               html  
    data.characterEncoding                  html  
    data.formatFamily                       html  
    data.tableAttributeNames                html  
    data.tableAttributeOrientation          html  
    data.tableAttributeStorageTypes         html  
    data.tableAttributeTypes                html  
    data.tableFieldDelimiter                html  
    data.tableMissingValueCodes             html  
    data.tableQuoteCharacter                html  
    data.tableSkipLinesHeader               html  
    dataone-defunct                         html  
    finding level-2 HTML links ... done

    dataone-deprecated                      html  
    dataone                                 html  
    describeObject                          html  
    documented.d1Identifiers                html  
    documented.entityNames                  html  
    documented.sizes                        html  
    downloadCert                            html  
    downloadObject                          html  
    echoCredentials                         html  
    encodeSolr                              html  
    encodeUrlPath                           html  
    encodeUrlQuery                          html  
    evaluateAuth                            html  
    generateIdentifier                      html  
    getAuthExpires                          html  
    getAuthMethod                           html  
    getAuthSubject                          html  
    getCN                                   html  
    getCapabilities                         html  
    getCert                                 html  
    getCertExpires                          html  
    getCertInfo                             html  
    getCertLocation                         html  
    getChecksum                             html  
    getD1Object                             html  
    getData                                 html  
    getDataObject                           html  
    getDataPackage                          html  
    getEndpoint                             html  
    getErrorDescription                     html  
    getFormat                               html  
    getFormatId                             html  
    getIdentifier                           html  
    getMN                                   html  
    getMNode                                html  
    getMNodeId                              html  
    getMetadataMember                       html  
    getObject                               html  
    getPackage                              html  
    getQueryEngineDescription               html  
    getSystemMetadata                       html  
    getToken                                html  
    getTokenInfo                            html  
    get_user_agent                          html  
    hasReservation                          html  
    isAuthExpired                           html  
    isAuthValid                             html  
    isAuthorized                            html  
    isCertExpired                           html  
    listFormats                             html  
    listMemberNodes                         html  
    listNodes                               html  
    listObjects                             html  
    listQueryEngines                        html  
    obscureAuth                             html  
    obscureCert                             html  
    parseCapabilities                       html  
    parseSolrResult                         html  
    ping                                    html  
    query                                   html  
    reserveIdentifier                       html  
    resolve                                 html  
    restoreAuth                             html  
    restoreCert                             html  
    setMNodeId                              html  
    setObsoletedBy                          html  
    setPublicAccess                         html  
    showAuth                                html  
    showClientSubject                       html  
    updateObject                            html  
    updateSystemMetadata                    html  
    uploadDataObject                        html  
    uploadDataPackage                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dataone)