* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dartR.base’ ...
** package ‘dartR.base’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘dartR.base’
    finding HTML links ... done
    bandicoot.gl                            html  
    cbind.dartR                             html  
    gl.He                                   html  
    gl.Ho                                   html  
    gl.alf                                  html  
    gl.allele.freq                          html  
    gl.amova                                html  
    gl.check.verbosity                      html  
    gl.check.wd                             html  
    gl.colors                               html  
    gl.compliance.check                     html  
    gl.define.pop                           html  
    gl.diagnostics.hwe                      html  
    gl.dist.ind                             html  
    gl.dist.pop                             html  
    gl.drop.ind                             html  
    gl.drop.loc                             html  
    gl.drop.pop                             html  
    gl.edit.recode.ind                      html  
    gl.edit.recode.pop                      html  
    gl.fdsim                                html  
    gl.filter.allna                         html  
    gl.filter.callrate                      html  
    gl.filter.factorloadings                html  
    gl.filter.hamming                       html  
    gl.filter.heterozygosity                html  
    gl.filter.hwe                           html  
    gl.filter.ld                            html  
    gl.filter.locmetric                     html  
    gl.filter.maf                           html  
    gl.filter.monomorphs                    html  
    gl.filter.overshoot                     html  
    gl.filter.pa                            html  
    gl.filter.rdepth                        html  
    gl.filter.reproducibility               html  
    gl.filter.secondaries                   html  
    gl.filter.taglength                     html  
    gl.fixed.diff                           html  
    gl.fst.pop                              html  
    gl.hwe.pop                              html  
    gl.impute                               html  
    gl.join                                 html  
    gl.keep.ind                             html  
    gl.keep.loc                             html  
    gl.keep.pop                             html  
    gl.load                                 html  
    gl.mahal.assign                         html  
    gl.make.recode.ind                      html  
    gl.make.recode.pop                      html  
    gl.map.interactive                      html  
    gl.merge.pop                            html  
    gl.pcoa                                 html  
    gl.pcoa.plot                            html  
    gl.plot.heatmap                         html  
    gl.print.history                        html  
    gl.prop.shared                          html  
    gl.randomize.snps                       html  
    gl.read.PLINK                           html  
    gl.read.csv                             html  
    gl.read.dart                            html  
    gl.read.fasta                           html  
    gl.read.silicodart                      html  
    gl.read.vcf                             html  
    gl.reassign.pop                         html  
    gl.recalc.metrics                       html  
    gl.recode.ind                           html  
    gl.recode.pop                           html  
    gl.rename.pop                           html  
    gl.report.bases                         html  
    gl.report.basics                        html  
    gl.report.callrate                      html  
    gl.report.diversity                     html  
    gl.report.factorloadings                html  
    gl.report.fstat                         html  
    gl.report.hamming                       html  
    gl.report.heterozygosity                html  
    gl.report.hwe                           html  
    gl.report.ld                            html  
    gl.report.ld.map                        html  
    gl.report.locmetric                     html  
    gl.report.maf                           html  
    gl.report.monomorphs                    html  
    gl.report.overshoot                     html  
    gl.report.pa                            html  
    gl.report.rdepth                        html  
    gl.report.reproducibility               html  
    gl.report.secondaries                   html  
    gl.report.taglength                     html  
    gl.sample                               html  
    gl.save                                 html  
    gl.select.colors                        html  
    gl.select.shapes                        html  
    gl.set.verbosity                        html  
    gl.set.wd                               html  
    gl.sim.cross                            html  
    gl.sim.genotypes                        html  
    gl.smearplot                            html  
    gl.sort                                 html  
    gl.subsample.ind                        html  
    gl.subsample.loc                        html  
    gl.test.heterozygosity                  html  
    gl.tree.nj                              html  
    gl.write.csv                            html  
    gl2bayesAss                             html  
    gl2bayescan                             html  
    gl2bpp                                  html  
    gl2demerelate                           html  
    gl2eigenstrat                           html  
    gl2fasta                                html  
    gl2faststructure                        html  
    gl2gds                                  html  
    gl2genalex                              html  
    gl2genepop                              html  
    gl2geno                                 html  
    gl2gi                                   html  
    gl2hiphop                               html  
    gl2phylip                               html  
    gl2plink                                html  
    gl2related                              html  
    gl2sa                                   html  
    gl2snapp                                html  
    gl2structure                            html  
    gl2svdquartets                          html  
    gl2treemix                              html  
    gl2vcf                                  html  
    possums.gl                              html  
    rbind.dartR                             html  
    sub-dartR-ANY-ANY-ANY-method            html  
    testset.gl                              html  
    testset.gs                              html  
    theme_dartR                             html  
    utils.basic.stats                       html  
    utils.check.datatype                    html  
    utils.dart2genlight                     html  
    finding level-2 HTML links ... done

    utils.dist.binary                       html  
    utils.dist.ind.snp                      html  
    utils.flag.start                        html  
    utils.hamming                           html  
    utils.het.pop                           html  
    utils.impute                            html  
    utils.is.fixed                          html  
    utils.jackknife                         html  
    utils.n.var.invariant                   html  
    utils.plink.run                         html  
    utils.plot.save                         html  
    utils.read.dart                         html  
    utils.read.fasta                        html  
    utils.read.ped                          html  
    utils.recalc.avgpic                     html  
    utils.recalc.callrate                   html  
    utils.recalc.freqhets                   html  
    utils.recalc.freqhomref                 html  
    utils.recalc.freqhomsnp                 html  
    utils.recalc.maf                        html  
    utils.reset.flags                       html  
    utils.transpose                         html  
    zzz                                     html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dartR.base)