* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dartR.base’ ...
** package ‘dartR.base’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘dartR.base’
finding HTML links ... done
cbind.dartR html
gl.He html
gl.Ho html
gl.add.indmetrics html
gl.alf html
gl.allele.freq html
gl.amova html
gl.check.verbosity html
gl.check.wd html
gl.colors html
gl.compliance.check html
gl.define.pop html
gl.diagnostics.hwe html
gl.dist.ind html
gl.dist.phylo html
gl.dist.pop html
gl.drop.ind html
gl.drop.loc html
gl.drop.pop html
gl.edit.recode.ind html
gl.edit.recode.pop html
gl.fdsim html
gl.filter.allna html
gl.filter.callrate html
gl.filter.factorloadings html
gl.filter.hamming html
gl.filter.heterozygosity html
gl.filter.hwe html
gl.filter.ld html
gl.filter.locmetric html
gl.filter.maf html
gl.filter.monomorphs html
gl.filter.overshoot html
gl.filter.pa html
gl.filter.rdepth html
gl.filter.reproducibility html
gl.filter.secondaries html
gl.filter.taglength html
gl.fixed.diff html
gl.fst.pop html
gl.hwe.pop html
gl.impute html
gl.join html
gl.keep.ind html
gl.keep.loc html
gl.keep.pop html
gl.load html
gl.mahal.assign html
gl.make.recode.ind html
gl.make.recode.pop html
gl.map.interactive html
gl.merge.pop html
gl.pcoa html
gl.pcoa.plot html
gl.plot.heatmap html
gl.print.history html
gl.prop.shared html
gl.randomize.snps html
gl.read.PLINK html
gl.read.csv html
gl.read.dart html
gl.read.fasta html
gl.read.silicodart html
gl.read.vcf html
gl.reassign.pop html
gl.recalc.metrics html
gl.recode.ind html
gl.recode.pop html
gl.rename.pop html
gl.report.allna html
gl.report.bases html
gl.report.basics html
gl.report.callrate html
gl.report.diversity html
gl.report.factorloadings html
gl.report.fstat html
gl.report.hamming html
gl.report.heterozygosity html
gl.report.hwe html
gl.report.ld html
gl.report.ld.map html
gl.report.locmetric html
gl.report.maf html
gl.report.monomorphs html
gl.report.overshoot html
gl.report.pa html
gl.report.polyploid_heterozygosity html
gl.report.rdepth html
gl.report.replicates html
gl.report.reproducibility html
gl.report.secondaries html
gl.report.taglength html
gl.sample html
gl.save html
gl.select.colors html
gl.select.shapes html
gl.set.verbosity html
gl.set.wd html
gl.sim.cross html
gl.sim.genotypes html
gl.smearplot html
gl.sort html
gl.subsample.ind html
gl.subsample.loc html
gl.subsample.loci html
gl.test.heterozygosity html
gl.tree.fitch html
gl.tree.nj html
gl.write.csv html
gl2bayesAss html
gl2bayescan html
gl2bpp html
gl2demerelate html
gl2eigenstrat html
gl2fasta html
gl2faststructure html
gl2gds html
gl2genalex html
gl2genepop html
gl2geno html
gl2gi html
gl2hiphop html
gl2phylip html
gl2plink html
gl2related html
gl2sa html
gl2snapper html
gl2structure html
gl2svdquartets html
gl2treemix html
gl2vcf html
rbind.dartR html
sub-dartR-ANY-ANY-ANY-method html
theme_dartR html
utils.basic.stats html
utils.check.datatype html
utils.dart2genlight html
utils.dist.binary html
utils.dist.ind.snp html
utils.flag.start html
utils.hamming html
utils.het.pop html
utils.impute html
utils.is.fixed html
utils.jackknife html
utils.n.var.invariant html
utils.plink.run html
utils.plot.save html
utils.read.dart html
utils.read.fasta html
utils.read.ped html
utils.recalc.avgpic html
utils.recalc.callrate html
utils.recalc.freqhets html
utils.recalc.freqhomref html
utils.recalc.freqhomsnp html
utils.recalc.maf html
utils.reset.flags html
utils.transpose html
utils.vcfr2genlight.polyploid html
zzz html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dartR.base)