* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dartR’ ...
** package ‘dartR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘dartR’
finding HTML links ... done
bandicoot.gl html
cbind.dartR html
gi2gl html
gl.He html
gl.Ho html
gl.LDNe html
gl.alf html
gl.amova html
gl.assign.grm html
gl.assign.mahalanobis html
gl.assign.pa html
gl.assign.pca html
gl.basic.stats html
gl.blast html
gl.check.verbosity html
gl.collapse html
gl.compliance.check html
gl.costdistances html
gl.define.pop html
gl.diagnostics.hwe html
gl.diagnostics.sim html
gl.dist.ind html
gl.dist.pop html
gl.drop.ind html
gl.drop.loc html
gl.drop.pop html
gl.edit.recode.ind html
gl.edit.recode.pop html
gl.evanno html
gl.fdsim html
gl.filter.allna html
gl.filter.callrate html
gl.filter.hamming html
gl.filter.heterozygosity html
gl.filter.hwe html
gl.filter.ld html
gl.filter.locmetric html
gl.filter.maf html
gl.filter.monomorphs html
gl.filter.overshoot html
gl.filter.pa html
gl.filter.parent.offspring html
gl.filter.rdepth html
gl.filter.reproducibility html
gl.filter.secondaries html
gl.filter.sexlinked html
gl.filter.taglength html
gl.fixed.diff html
gl.fst.pop html
gl.genleastcost html
finding level-2 HTML links ... done
gl.grm html
gl.grm.network html
gl.hwe.pop html
gl.ibd html
gl.impute html
gl.install.vanilla.dartR html
gl.join html
gl.keep.ind html
gl.keep.loc html
gl.keep.pop html
gl.ld.distance html
gl.ld.haplotype html
gl.list.reports html
gl.load html
gl.make.recode.ind html
gl.make.recode.pop html
gl.map.interactive html
gl.map.structure html
gl.merge.pop html
gl.nhybrids html
gl.outflank html
gl.pcoa html
gl.pcoa.plot html
gl.percent.freq html
gl.play.history html
gl.plot.heatmap html
gl.plot.network html
gl.plot.structure html
gl.print.history html
gl.print.reports html
gl.propShared html
gl.random.snp html
gl.read.csv html
gl.read.dart html
gl.read.fasta html
gl.read.silicodart html
gl.read.vcf html
gl.reassign.pop html
gl.recalc.metrics html
gl.recode.ind html
gl.recode.pop html
gl.rename.pop html
gl.report.bases html
gl.report.callrate html
gl.report.diversity html
gl.report.hamming html
gl.report.heterozygosity html
gl.report.hwe html
gl.report.ld html
gl.report.ld.map html
gl.report.locmetric html
gl.report.maf html
gl.report.monomorphs html
gl.report.overshoot html
gl.report.pa html
gl.report.parent.offspring html
gl.report.rdepth html
gl.report.reproducibility html
gl.report.secondaries html
gl.report.sexlinked html
gl.report.taglength html
gl.run.structure html
gl.sample html
gl.save html
gl.select.colors html
gl.select.shapes html
gl.set.verbosity html
gl.sfs html
gl.sim.WF.run html
gl.sim.WF.table html
gl.sim.create_dispersal html
gl.sim.emigration html
gl.sim.ind html
gl.sim.mutate html
gl.sim.offspring html
gl.smearplot html
gl.sort html
gl.spatial.autoCorr html
gl.subsample.loci html
gl.test.heterozygosity html
gl.tree.nj html
gl.write.csv html
gl2bayescan html
gl2bpp html
gl2demerelate html
gl2eigenstrat html
gl2fasta html
gl2faststructure html
gl2gds html
gl2genalex html
gl2genepop html
gl2geno html
gl2gi html
gl2hiphop html
gl2phylip html
gl2plink html
gl2related html
gl2sa html
gl2sfs html
gl2shp html
gl2snapp html
gl2structure html
gl2svdquartets html
gl2treemix html
gl2vcf html
interactive_reference html
interactive_sim_run html
is.fixed html
platy html
possums.gl html
rbind.dartR html
sub-dartR-ANY-ANY-ANY-method html
testset.gl html
testset.gs html
testset_SNPs_2Row html
testset_metadata html
testset_pop_recode html
theme_dartR html
utils.assignment html
utils.assignment_2 html
utils.assignment_3 html
utils.assignment_4 html
utils.basic.stats html
utils.check.datatype html
utils.dart2genlight html
utils.dist.binary html
utils.dist.ind.snp html
utils.flag.start html
utils.hamming html
utils.het.pop html
utils.jackknife html
utils.n.var.invariant html
utils.outflank.MakeDiploidFSTMat html
utils.outflank html
utils.outflank.plotter html
utils.read.dart html
utils.recalc.avgpic html
utils.recalc.callrate html
utils.recalc.freqhets html
utils.recalc.freqhomref html
utils.recalc.freqhomsnp html
utils.recalc.maf html
utils.reset.flags html
utils.spautocor html
utils.structure.evanno html
utils.structure.genind2gtypes html
utils.structure.run html
zzz html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dartR)