• using R version 4.4.2 Patched (2024-11-18 r87347)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘dartR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘dartR’ version ‘2.9.7’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘dartR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [14s/17s] OK
• checking whether the package can be loaded with stated dependencies ... [14s/16s] OK
• checking whether the package can be unloaded cleanly ... [14s/17s] OK
• checking whether the namespace can be loaded with stated dependencies ... [13s/20s] OK
• checking whether the namespace can be unloaded cleanly ... [14s/18s] OK
• checking loading without being on the library search path ... [15s/16s] OK
• checking whether startup messages can be suppressed ... [14s/18s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [131s/180s] OK
• checking Rd files ... [2s/4s] NOTE checkRd: (-1) gl.filter.maf.Rd:7: Lost braces; missing escapes or markup?      7 | {adegenet} object}        | ^ checkRd: (-1) gl.pcoa.Rd:68: Lost braces; missing escapes or markup?     68 | The function is essentially a wrapper for glPca {adegenet} or pcoa \{ape\}        | ^ checkRd: (-1) gl.play.history.Rd:17: Lost braces     17 | code{x2@other$history[c(1,4,5)]}). [optional].}        | ^ checkRd: (-1) utils.jackknife.Rd:49: Lost braces     49 | bold{Note} that when n is very small, jackknife resampling is not recommended.        | ^ checkRd: (-1) utils.jackknife.Rd:51: Lost braces     51 | Parallel computation is implemented. The argument code{n.cores} indicates the        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [4s/4s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [97s/117s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [16s/19s] OK   Running ‘testthat.R’ [15s/19s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [3s/3s] OK
• checking PDF version of manual ... [14s/20s] OK
• checking HTML version of manual ... [8s/14s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE