* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ctl’ ...
** package ‘ctl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfaXJY3/R.INSTALL3f103c2ab250be/ctl/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c R_init.c -o R_init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c correlation.c -o correlation.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ctlio.c -o ctlio.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mapctl.c -o mapctl.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c matrix.c -o matrix.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c permutation.c -o permutation.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rmapctl.c -o rmapctl.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sort.c -o sort.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c structs.c -o structs.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c vector.c -o vector.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ctl.so R_init.o correlation.o ctlio.o mapctl.o matrix.o permutation.o rmapctl.o sort.o structs.o vector.o -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfaXJY3/R.INSTALL3f103c2ab250be/ctl/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfaXJY3/R.INSTALL3f103c2ab250be/ctl/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfaXJY3/R.INSTALL3f103c2ab250be/ctl/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ctl/00new/ctl/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ctl’
    finding HTML links ... done
    ath.churchill                           html  
    ath.metabolites                         html  
    ath.result                              html  
    basic.qc                                html  
    ctl-internal                            html  
    ctl-package                             html  
    ctl.circle                              html  
    ctl.helper                              html  
    ctl.hist                                html  
    ctl.image                               html  
    ctl.lineplot                            html  
    ctl.load                                html  
    ctl.mapping                             html  
    ctl.network                             html  
    ctl.permute.plot                        html  
    ctl.plot.ctlobject                      html  
    ctl.plot.ctlscan                        html  
    ctl.print.ctlobject                     html  
    ctl.print.ctlscan                       html  
    ctl.profiles                            html  
    ctl.regions                             html  
    ctl.scan                                html  
    ctl.scan.cross                          html  
    ctl.significant                         html  
    detect.peaks                            html  
    plotTraits                              html  
    qtl.image                               html  
    qtl.mapping                             html  
    scanSD                                  html  
    scanSD.cross                            html  
    scanSlopes                              html  
    scanSlopes.cross                        html  
    yeast.brem                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ctl)