* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cry’ ...
** package ‘cry’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cry’
    finding HTML links ... done
    angle                                   html  
    avei_vs_res                             html  
    bravais                                 html  
    calculate_cell_volume                   html  
    calculate_cell_volume.rec_unit_cell     html  
    calculate_cell_volume.unit_cell         html  
    change_COLSRC                           html  
    check_angle_validity                    html  
    check_bravais_validity                  html  
    check_cryst_symm_validity               html  
    check_merged_reflections_validity       html  
    check_rec_unit_cell_validity            html  
    check_unit_cell_validity                html  
    check_validity                          html  
    create_merged_reflections               html  
    create_merged_reflections.default       html  
    create_rec_unit_cell                    html  
    create_rec_unit_cell.bravais            html  
    create_rec_unit_cell.cryst_symm         html  
    create_rec_unit_cell.default            html  
    create_rec_unit_cell.unit_cell          html  
    create_unit_cell                        html  
    create_unit_cell.bravais                html  
    create_unit_cell.cryst_symm             html  
    create_unit_cell.default                html  
    create_unit_cell.rec_unit_cell          html  
    cryst_symm                              html  
    crystal_family                          html  
    crystal_system                          html  
    deplete_systematic_absences             html  
    extract_symmetry_info                   html  
    findHM                                  html  
    find_symm_setting                       html  
    frac_to_orth                            html  
    full_symm_strings                       html  
    generate_miller                         html  
    hkl_to_reso                             html  
    lattice_stuff                           html  
    lowest_uc_compatible_SG                 html  
    merged_reflections                      html  
    num_symm_settings                       html  
    op_xyz_list_to_matrix_list              html  
    op_xyz_to_matrix                        html  
    orth_to_frac                            html  
    plot_SHELX                              html  
    print.angle                             html  
    print.bravais                           html  
    print.cryst_symm                        html  
    print.rec_unit_cell                     html  
    print.unit_cell                         html  
    readCIF                                 html  
    readMTZ                                 html  
    readMTZHeader                           html  
    readSF_CIF                              html  
    readXDS_ASCII                           html  
    readXDS_ASCIIHeader                     html  
    read_SHELX_log                          html  
    readmm_CIF                              html  
    readpd_rtv                              html  
    readsm_REFL                             html  
    rec_unit_cell                           html  
    syminfo_to_matrix_list                  html  
    syminfo_to_op_xyz_list                  html  
    symm_to_cell_const                      html  
    sysabs                                  html  
    theme_cry                               html  
    translate_SG                            html  
    unit_cell                               html  
    writeMTZ                                html  
    writeXDS_ASCII                          html  
    xtal_mat01                              html  
    xtal_mat02                              html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cry)