* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘cpam’ ... ** this is package ‘cpam’ version ‘0.1.3’ ** package ‘cpam’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘cpam’ finding HTML links ... done compute_normalization_factors html compute_p_values html convert_to_long_format html cpam-class html cpam-package html estimate_changepoint html estimate_dispersions_wrapper html handle_gene_aggregation html import_count_data html ose_rule html pipe html plot_cluster html plot_cpam html prepare_cpam html process_bootstrap_data html process_count_matrix html results html select_shape html simulate_p_mvn html summarise_bootstraps html ts_filter html validate_cores html validate_inputs html visualise html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpam)