* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘conos’ ...
** package ‘conos’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzNrtOp/R.INSTALL1e13b619a4fc62/conos/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:205,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Dense:1,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigen.h:25,
from RcppExports.cpp:5:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:174:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:165:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:271:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<float>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<double>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:37,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
96 | class SparseMatrix
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, 1>’
178 | class Matrix
| ^~~~~~
RcppExports.cpp:332:45: required from here
332 | rcpp_result_gen = Rcpp::wrap(spcov(m, cm));
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, 1>’
178 | class Matrix
| ^~~~~~
RcppExports.cpp:332:45: required from here
332 | rcpp_result_gen = Rcpp::wrap(spcov(m, cm));
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, -1>’
178 | class Matrix
| ^~~~~~
RcppExports.cpp:332:39: required from here
332 | rcpp_result_gen = Rcpp::wrap(spcov(m, cm));
| ~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >’
336 | typedef typename DenseCoeffsBase<Derived,ReadOnlyAccessors>::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >’
1505 | struct evaluator<SparseMatrix<_Scalar,_Options,_StorageIndex> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]’
77 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’
132 | assign_sparse_to_sparse(dst.derived(), src.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = assign_op<double, double>]’
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:917:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:713:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’
713 | *this = other.derived();
| ~~~~~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix<Scalar> Rcpp::traits::Exporter<Eigen::SparseMatrix<Scalar> >::get() [with T = double]’
387 | return ans;
| ^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]’
89 | return exporter.get();
| ~~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]’
152 | return internal::as<T>(x, typename traits::r_type_traits<T>::r_category());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/InputParameter.h:72:59: required from ‘Rcpp::ConstReferenceInputParameter<T>::ConstReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]’
72 | ConstReferenceInputParameter(SEXP x_) : obj( as<T>(x_) ){}
| ~~~~~^~~~
RcppExports.cpp:330:86: required from here
330 | Rcpp::traits::input_parameter< const Eigen::SparseMatrix<double>& >::type m(mSEXP);
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Rjnmf.cpp -o Rjnmf.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c adjustedRand.cpp -o adjustedRand.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c checkfunctions.cpp -o checkfunctions.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:205,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Dense:1,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigen.h:25,
from include/largeVis.h:7,
from checkfunctions.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:174:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:165:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:271:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<float>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<double>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:37,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
96 | class SparseMatrix
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpca.cpp -o cpca.o
cpca.cpp: In function ‘Rcpp::List cpcaF(const arma::cube&, const arma::vec&, int, int, double, Rcpp::Nullable<Rcpp::Matrix<14> >, bool)’:
cpca.cpp:25:8: warning: unused variable ‘converged’ [-Wunused-variable]
25 | bool converged=false;
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c deltacut.cpp -o deltacut.o
deltacut.cpp: In function ‘double normalized_entropy(arma::ivec&, int)’:
deltacut.cpp:110:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
110 | if(*i == labels.n_elem) { return(0.0); } // extreme case
| ~~~^~~~~~~~~~~~~~~~
deltacut.cpp: In function ‘Rcpp::List greedyModularityCutC(arma::imat&, arma::vec&, int, int, arma::ivec&, double, bool)’:
deltacut.cpp:267:13: warning: unused variable ‘ni’ [-Wunused-variable]
267 | int ni=r[i]=idm[r[i]]=leafid++;
| ^~
deltacut.cpp: In function ‘Rcpp::List _treeJaccard(arma::imat&, arma::imat&, arma::ivec&, arma::ivec&)’:
deltacut.cpp:312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
312 | for(int i=0;i<merges.n_rows;i++) {
| ~^~~~~~~~~~~~~~
deltacut.cpp:336:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
336 | for(int j=0;j<mi.n_elem;j++) {
| ~^~~~~~~~~~
deltacut.cpp: In function ‘Rcpp::List treeJaccard(arma::imat&, arma::imat&, arma::ivec&, Rcpp::Nullable<arma::Mat<int>&>)’:
deltacut.cpp:355:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
355 | if(nleafs != clusters.n_cols) stop("number of leafs differs from the number of columns in the clusters matrix");
| ~~~~~~~^~~~~~~~~~~~~~~~~~
deltacut.cpp:375:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
375 | for(int i=0;i<clm.n_rows;i++) {
| ~^~~~~~~~~~~
deltacut.cpp: In function ‘std::vector<int, std::allocator<int> > get_membership_indices(int, arma::imat&, IIVM&)’:
deltacut.cpp:405:7: warning: unused variable ‘nleafs’ [-Wunused-variable]
405 | int nleafs=merges.n_rows+1; // number of leafs in the tree
| ^~~~~~
deltacut.cpp: In function ‘Rcpp::List scoreTreeConsistency(arma::imat&, arma::imat&, arma::ivec&, int)’:
deltacut.cpp:429:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
429 | for(int i=0;i<ref.n_rows;i++) {
| ~^~~~~~~~~~~
deltacut.cpp:479:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
479 | for(int i=0;i<currentCut.n_elem;i++) {
| ~^~~~~~~~~~~~~~~~~~
deltacut.cpp:484:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
484 | if(j>=leafidmap.n_elem) throw std::range_error("requesting out of range node in leafidmap");
| ~^~~~~~~~~~~~~~~~~~
deltacut.cpp:487:96: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
487 | Rcout<<"idmap violation at j="<<j<<" ("<<ni<<"); test.n_rows="<<test.n_rows<<' '<<(ni>test.n_rows)<<endl<<flush;
| ~~^~~~~~~~~~~~
deltacut.cpp:509:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
509 | for(int i=0;i<currentCut.n_elem;i++) {
| ~^~~~~~~~~~~~~~~~~~
deltacut.cpp:523:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
523 | for(int i=0;i<ref.n_rows;i++) {
| ~^~~~~~~~~~~
deltacut.cpp: In function ‘Rcpp::List maxStableClusters(arma::imat&, arma::vec&, double, int)’:
deltacut.cpp:578:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
578 | for(int i=0;i<merges.n_rows;i++) {
| ~^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c edgeFilter.cpp -o edgeFilter.o
edgeFilter.cpp: In function ‘Rcpp::NumericVector pareDownHubEdges(SEXP, Rcpp::IntegerVector, int, int)’:
edgeFilter.cpp:50:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
50 | while(nedges > k && j<cido.n_elem && cid[ cido[j] ]>klow) {
| ~^~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c edge_rebalancing.cpp -o edge_rebalancing.o
edge_rebalancing.cpp: In function ‘Rcpp::NumericMatrix getSumWeightMatrix(const std::vector<double>&, const std::vector<int>&, const std::vector<int>&, const std::vector<int>&, bool)’:
edge_rebalancing.cpp:18:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
18 | for (int i = 0; i < weights.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~
edge_rebalancing.cpp: In function ‘std::vector<double> adjustWeightsByCellBalancingC(std::vector<double>, const std::vector<int>&, const std::vector<int>&, const std::vector<int>&, Rcpp::NumericMatrix)’:
edge_rebalancing.cpp:41:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
41 | for (int i = 0; i < weights.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c edgeweights.cpp -o edgeweights.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:205,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Dense:1,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigen.h:25,
from edgeweights.cpp:3:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:174:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:165:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:271:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<float>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<double>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:37,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
96 | class SparseMatrix
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
edgeweights.cpp: In member function ‘Eigen::SparseMatrix<double, 0, int> ReferenceEdges::getWIJ()’:
edgeweights.cpp:149:31: warning: comparison of integer expressions of different signedness: ‘edgeidxtype’ {aka ‘int’} and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
149 | for (edgeidxtype i = 0; i < edge_from.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 1, int> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 1, int> >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 1, int>’
96 | class SparseMatrix
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1040:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator<Eigen::Triplet<double>*, std::vector<Eigen::Triplet<double> > >; SparseMatrixType = Eigen::SparseMatrix<double, 0, int>; DupFunctor = scalar_sum_op<double, double>]’
1040 | SparseMatrix<Scalar,IsRowMajor?ColMajor:RowMajor,StorageIndex> trMat(mat.rows(),mat.cols());
| ^~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator<Eigen::Triplet<double>*, std::vector<Eigen::Triplet<double> > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’
1110 | internal::set_from_triplets<InputIterators, SparseMatrix<Scalar,_Options,_StorageIndex> >(begin, end, *this, internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
edgeweights.cpp:154:24: required from here
154 | wij.setFromTriplets(tripletList.begin(),tripletList.end());
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 1, int>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 1, int> > >’
336 | typedef typename DenseCoeffsBase<Derived,ReadOnlyAccessors>::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 1, int> >’
1505 | struct evaluator<SparseMatrix<_Scalar,_Options,_StorageIndex> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::SparseMatrix<double, 1, int>; _Scalar = double; int _Options = 0; _StorageIndex = int]’
1181 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator<OtherDerived>::Flags & RowMajorBit);
| ^~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator<Eigen::Triplet<double>*, std::vector<Eigen::Triplet<double> > >; SparseMatrixType = Eigen::SparseMatrix<double, 0, int>; DupFunctor = scalar_sum_op<double, double>]’
1063 | mat = trMat;
| ~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator<Eigen::Triplet<double>*, std::vector<Eigen::Triplet<double> > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’
1110 | internal::set_from_triplets<InputIterators, SparseMatrix<Scalar,_Options,_StorageIndex> >(begin, end, *this, internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
edgeweights.cpp:154:24: required from here
154 | wij.setFromTriplets(tripletList.begin(),tripletList.end());
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >’
336 | typedef typename DenseCoeffsBase<Derived,ReadOnlyAccessors>::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >’
1505 | struct evaluator<SparseMatrix<_Scalar,_Options,_StorageIndex> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:79:45: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 1, int>]’
79 | const bool transpose = (DstEvaluatorType::Flags & RowMajorBit) != (SrcEvaluatorType::Flags & RowMajorBit);
| ^~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 1, int>; Functor = Eigen::internal::assign_op<double, double>; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’
132 | assign_sparse_to_sparse(dst.derived(), src.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:38:16: required from ‘Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::SparseMatrix<double, 1, int>; Derived = Eigen::SparseMatrix<double, 0, int>]’
37 | internal::Assignment<Derived,OtherDerived,internal::assign_op<Scalar,typename OtherDerived::Scalar> >
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
38 | ::run(derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1239:27: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::SparseMatrix<double, 1, int>; _Scalar = double; int _Options = 0; _StorageIndex = int]’
1239 | return Base::operator=(other.derived());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator<Eigen::Triplet<double>*, std::vector<Eigen::Triplet<double> > >; SparseMatrixType = Eigen::SparseMatrix<double, 0, int>; DupFunctor = scalar_sum_op<double, double>]’
1063 | mat = trMat;
| ~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator<Eigen::Triplet<double>*, std::vector<Eigen::Triplet<double> > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’
1110 | internal::set_from_triplets<InputIterators, SparseMatrix<Scalar,_Options,_StorageIndex> >(begin, end, *this, internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
edgeweights.cpp:154:24: required from here
154 | wij.setFromTriplets(tripletList.begin(),tripletList.end());
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gradients.cpp -o gradients.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:205,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Dense:1,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigen.h:25,
from include/largeVis.h:7,
from gradients.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:174:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:165:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:271:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<float>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<double>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:37,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
96 | class SparseMatrix
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
gradients.cpp: In member function ‘distancetype Gradient::distAndVector(const coordinatetype*, const coordinatetype*, coordinatetype*) const’:
gradients.cpp:21:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const dimidxtype’ {aka ‘const unsigned int’} [-Wsign-compare]
21 | for (int d = 0; d < D; d++) {
| ~~^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c graph_embedding.cpp -o graph_embedding.o
graph_embedding.cpp: In function ‘std::unordered_map<int, double> get_hitting_time_map(const std::vector<int>&, const std::vector<double>&)’:
graph_embedding.cpp:66:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
66 | for (int v2 = 0; v2 < adjacent_ids.size(); ++v2) {
| ~~~^~~~~~~~~~~~~~~~~~~~~
graph_embedding.cpp: In function ‘void dfs_hitting_time(const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&, int, std::vector<bool>&, path_map_t&, double, int, double, int, double)’:
graph_embedding.cpp:126:55: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<int, Paths>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
126 | if ((current_prob < min_prob && result_paths.size() >= min_visited_verts) || current_prob < min_prob_lower)
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
graph_embedding.cpp:131:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
131 | for (int i = 0; i < adjacency_list.at(vertex_id).size(); ++i)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
graph_embedding.cpp: In function ‘std::pair<std::vector<double>, std::vector<int> > hitting_time_per_neighbor(const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&, int, double, int, double, int)’:
graph_embedding.cpp:152:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
152 | if (start_vertex < 0 || start_vertex >= adjacency_list.size())
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
graph_embedding.cpp: In function ‘std::pair<std::vector<std::vector<int> >, std::vector<std::vector<double> > > hitting_time_per_neighbors(const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&, int, int, double, int, double, int, bool)’:
graph_embedding.cpp:188:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
188 | if (n_verts <= 0 || n_verts >= adjacency_list.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
graph_embedding.cpp: In function ‘Rcpp::List commute_time_per_node(const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&, int, int, bool)’:
graph_embedding.cpp:247:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
247 | for (int v1 = 0; v1 < adjacency_list.size(); ++v1) {
| ~~~^~~~~~~~~~~~~~~~~~~~~~~
graph_embedding.cpp:276:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::unordered_map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
276 | for (int v1 = 0; v1 < hitting_times_map.size(); ++v1) {
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
graph_embedding.cpp: In instantiation of ‘std::vector<T> reorder(const std::vector<T>&, std::vector<long unsigned int>, size_t) [with T = double; size_t = long unsigned int]’:
graph_embedding.cpp:171:31: required from here
171 | auto values_sorted = reorder(values, sorted_ids, max_adj_num);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
graph_embedding.cpp:39:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
39 | for (int i = 0; i < max_size; ++i) {
| ~~^~~~~~~~~~
graph_embedding.cpp: In instantiation of ‘std::vector<T> reorder(const std::vector<T>&, std::vector<long unsigned int>, size_t) [with T = int; size_t = long unsigned int]’:
graph_embedding.cpp:172:32: required from here
172 | auto indexes_sorted = reorder(indexes, sorted_ids, max_adj_num);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
graph_embedding.cpp:39:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
39 | for (int i = 0; i < max_size; ++i) {
| ~~^~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c largeVis.cpp -o largeVis.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:205,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Dense:1,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigen.h:25,
from include/largeVis.h:7,
from largeVis.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:174:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:165:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:271:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<float>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<double>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:37,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
96 | class SparseMatrix
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
largeVis.cpp: In constructor ‘MomentumVisualizer::MomentumVisualizer(vertexidxtype*, vertexidxtype*, coordinatetype*, const dimidxtype&, const vertexidxtype&, const edgeidxtype&, distancetype, const iterationtype&, const float&, const unsigned int&, const double&, const double&)’:
largeVis.cpp:164:45: warning: comparison of integer expressions of different signedness: ‘vertexidxtype’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
164 | for (vertexidxtype i = 0; i != D*N; ++i) momentumarray[i] = 0;
| ~~^~~~~~
largeVis.cpp: In function ‘arma::mat sgd(arma::mat&, arma::ivec&, arma::ivec&, arma::ivec&, arma::vec&, const double&, const double&, const arma::uword&, const int&, const double&, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage> >, const bool&, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::Vector<13> >, bool)’:
largeVis.cpp:254:43: warning: comparison of integer expressions of different signedness: ‘edgeidxtype’ {aka ‘int’} and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
254 | for (edgeidxtype e = 0; e < targets_i.n_elem; ++e) negweights[targets_i[e]]++;
| ~~^~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c propagate_labels.cpp -o propagate_labels.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:205,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Dense:1,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigen.h:25,
from propagate_labels.cpp:6:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:174:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:165:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:271:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<float>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<double>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:37,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
96 | class SparseMatrix
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
propagate_labels.cpp: In function ‘si_map_t parse_edges(const Rcpp::StringMatrix&, const std::vector<double>&, std::vector<Edge>&, s_vec_t)’:
propagate_labels.cpp:42:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
42 | if (edge_verts.nrow() != edge_weights.size() || edge_verts.ncol() != 2)
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
propagate_labels.cpp:50:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
50 | for (size_t i = 0; i < edge_verts.nrow(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~
propagate_labels.cpp:57:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
57 | for (size_t i = 0; i < edge_verts.nrow(); ++i) { // TODO: add informative message in case vertex name is not presented in the map
| ~~^~~~~~~~~~~~~~~~~~~
propagate_labels.cpp: In function ‘Rcpp::NumericMatrix propagate_labels(const Rcpp::StringMatrix&, const std::vector<double>&, const Rcpp::StringVector&, int, bool, double, double, double, bool)’:
propagate_labels.cpp:69:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
69 | if (edge_verts.nrow() != edge_weights.size() || edge_verts.ncol() != 2)
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, -1>’
178 | class Matrix
| ^~~~~~
propagate_labels.cpp:77:7: required from here
77 | Mat label_probs = Mat::Zero(vertex_ids.size(), label_ids.size());
| ^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, -1>’
178 | class Matrix
| ^~~~~~
propagate_labels.cpp:77:7: required from here
77 | Mat label_probs = Mat::Zero(vertex_ids.size(), label_ids.size());
| ^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >’
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
propagate_labels.cpp:77:30: required from here
77 | Mat label_probs = Mat::Zero(vertex_ids.size(), label_ids.size());
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
propagate_labels.cpp:80:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
80 | for (size_t i = 0; i < vert_labels.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
propagate_labels.cpp:95:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map<std::__cxx11::basic_string<char>, long unsigned int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
95 | for (int v_id = 0; v_id < vertex_ids.size(); ++v_id) {
| ~~~~~^~~~~~~~~~~~~~~~~~~
propagate_labels.cpp:96:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map<std::__cxx11::basic_string<char>, long unsigned int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
96 | for (int l_id = 0; l_id < label_ids.size(); ++l_id) {
| ~~~~~^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>’
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1>’
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, 1, -1, false, true>’
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, 1, -1, false, Eigen::Dense>’
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>’
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
propagate_labels.cpp:143:19: required from here
143 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight;
| ~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >’
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >’
38 | >::type Scalar;
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, Eigen::Dense>’
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >’
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
propagate_labels.cpp:143:62: required from here
143 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight;
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, Eigen::Dense>’
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >’
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
propagate_labels.cpp:143:62: required from here
143 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight;
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 1, -1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 1, -1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 1, -1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 1, -1>’
178 | class Matrix
| ^~~~~~
propagate_labels.cpp:143:62: required from here
143 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight;
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
propagate_labels.cpp: In function ‘void smooth_count_matrix_c(const std::vector<Edge>&, Mat&, int, double, double, double, bool, bool, const std::vector<bool>&)’:
propagate_labels.cpp:162:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
162 | for (size_t row_id = 0; row_id < cm_new.rows(); ++row_id) {
| ~~~~~~~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>’
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> >’
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
propagate_labels.cpp:168:26: required from here
168 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm<Eigen::Infinity>();
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > >’
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > >’
42 | class ArrayWrapper : public ArrayBase<ArrayWrapper<ExpressionType> >
| ^~~~~~~~~~~~
propagate_labels.cpp:168:45: required from here
168 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm<Eigen::Infinity>();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > >’
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > >, Eigen::Dense>’
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > >’
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
propagate_labels.cpp:168:51: required from here
168 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm<Eigen::Infinity>();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > >’
140 | class MatrixWrapper : public MatrixBase<MatrixWrapper<ExpressionType> >
| ^~~~~~~~~~~~~
propagate_labels.cpp:168:60: required from here
168 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm<Eigen::Infinity>();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
propagate_labels.cpp: In function ‘SEXPREC* smooth_count_matrix(const Rcpp::StringMatrix&, const std::vector<double>&, const Rcpp::NumericMatrix&, const std::vector<bool>&, int, double, double, double, bool, bool)’:
propagate_labels.cpp:192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
192 | if (edge_verts.nrow() != edge_weights.size())
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
propagate_labels.cpp: In function ‘Rcpp::List adjacent_vertices(const Rcpp::StringMatrix&)’:
propagate_labels.cpp:228:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
228 | for (size_t i = 0; i < edge_verts.nrow(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~
propagate_labels.cpp: In function ‘Rcpp::List adjacent_vertex_weights(const Rcpp::StringMatrix&, const std::vector<double>&)’:
propagate_labels.cpp:241:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
241 | for (size_t i = 0; i < edge_verts.nrow(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> >’
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from ‘Derived& Eigen::DenseBase<Derived>::operator/=(const Scalar&) [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; Scalar = double]’
41 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::div_assign_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
propagate_labels.cpp:163:52: required from here
163 | cm_new.row(row_id) /= sum_weights.at(row_id);
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > >, Eigen::Dense>’
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > >’
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Dot.h:244:22: required from ‘static Eigen::internal::lpNorm_selector<Derived, -1>::RealScalar Eigen::internal::lpNorm_selector<Derived, -1>::run(const Eigen::MatrixBase<Derived>&) [with Derived = Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > >; RealScalar = double]’
244 | return m.cwiseAbs().maxCoeff();
| ~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::lpNorm() const [with int p = -1; Derived = Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > >; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
269 | return internal::lpNorm_selector<Derived, p>::run(*this);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
propagate_labels.cpp:168:86: required from here
168 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm<Eigen::Infinity>();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:277:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >’
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >’
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >; Functor = add_assign_op<double, double>]’
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >; Functor = Eigen::internal::add_assign_op<double, double>; Weak = void]’
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >; Func = add_assign_op<double, double>]’
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase<Derived>::operator+=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>]’
177 | call_assignment(derived(), other.derived(), internal::add_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
propagate_labels.cpp:143:62: required from here
143 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight;
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > >; Eigen::Index = long int]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > >; Func = Eigen::internal::scalar_max_op<double, double, 0>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > > >; Scalar = double]’
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double, 0>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > >; typename Eigen::internal::traits<T>::Scalar = double]’
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > >; typename Eigen::internal::traits<T>::Scalar = double]’
448 | return derived().redux(Eigen::internal::scalar_max_op<Scalar,Scalar, NaNPropagation>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > > >; typename Eigen::internal::traits<T>::Scalar = double]’
466 | return maxCoeff<PropagateFast>();
| ~~~~~~~~~~~~~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Dot.h:244:33: required from ‘static Eigen::internal::lpNorm_selector<Derived, -1>::RealScalar Eigen::internal::lpNorm_selector<Derived, -1>::run(const Eigen::MatrixBase<Derived>&) [with Derived = Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > >; RealScalar = double]’
244 | return m.cwiseAbs().maxCoeff();
| ~~~~~~~~~~~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::lpNorm() const [with int p = -1; Derived = Eigen::MatrixWrapper<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, -1> > > > >; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]’
269 | return internal::lpNorm_selector<Derived, p>::run(*this);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
propagate_labels.cpp:168:86: required from here
168 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm<Eigen::Infinity>();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I"./include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spcov.cpp -o spcov.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:205,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Dense:1,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:28,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigen.h:25,
from spcov.cpp:9:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:174:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:165:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:271:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<float>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
178 | class Matrix
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<double>’
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:37,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
96 | class SparseMatrix
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1> >’
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, -1>’
178 | class Matrix
| ^~~~~~
spcov.cpp:14:78: required from here
14 | Eigen::MatrixXd spcov(const Eigen::SparseMatrix<double>& m,Eigen::VectorXd cm) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, -1>’
178 | class Matrix
| ^~~~~~
spcov.cpp:14:78: required from here
14 | Eigen::MatrixXd spcov(const Eigen::SparseMatrix<double>& m,Eigen::VectorXd cm) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, 1>’
178 | class Matrix
| ^~~~~~
spcov.cpp:14:78: required from here
14 | Eigen::MatrixXd spcov(const Eigen::SparseMatrix<double>& m,Eigen::VectorXd cm) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> > >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> > >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl<const Eigen::SparseMatrix<double, 0, int>, 1024>’
22 | class SparseTransposeImpl<MatrixType,CompressedAccessBit>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl<const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>’
45 | template<typename MatrixType> class TransposeImpl<MatrixType,Sparse>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >’
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
spcov.cpp:15:32: required from here
15 | Eigen::MatrixXd v=m.transpose()*m;
| ~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Product.h:145:7: required from ‘class Eigen::ProductImpl<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2, Eigen::Sparse>’
145 | class ProductImpl : public internal::generic_xpr_base<Product<Lhs,Rhs,Option>, MatrixXpr, StorageKind>::type
| ^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>’
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
spcov.cpp:15:35: required from here
15 | Eigen::MatrixXd v=m.transpose()*m;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl<Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose<Eigen::Matrix<double, -1, 1> >’
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
spcov.cpp:16:23: required from here
16 | v-=(cm* cm.transpose())*((double)m.rows());
| ~~~~~~~~~~~~^~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0, 5>’
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0, Eigen::Dense>’
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>’
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
spcov.cpp:16:24: required from here
16 | v-=(cm* cm.transpose())*((double)m.rows());
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >’
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
38 | >::type Scalar;
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
spcov.cpp:16:44: required from here
16 | v-=(cm* cm.transpose())*((double)m.rows());
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>’
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
spcov.cpp:16:44: required from here
16 | v-=(cm* cm.transpose())*((double)m.rows());
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >’
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from ‘Derived& Eigen::DenseBase<Derived>::operator/=(const Scalar&) [with Derived = Eigen::Matrix<double, -1, -1>; Scalar = double]’
41 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::div_assign_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
spcov.cpp:17:26: required from here
17 | v/=((double) m.rows()-1);
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >’
336 | typedef typename DenseCoeffsBase<Derived,ReadOnlyAccessors>::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >’
1505 | struct evaluator<SparseMatrix<_Scalar,_Options,_StorageIndex> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator<const Eigen::SparseMatrix<double, 0, int> >’
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:58:63: required from ‘struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IteratorBased, double>’
58 | typedef typename evaluator<ArgType>::InnerIterator EvalIterator;
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> > >’
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseUtil.h:121:8: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>]’
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Assign.h:75:28: required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; Derived = Eigen::Matrix<double, -1, -1>]’
75 | internal::call_assignment(derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:628:22: required from ‘Derived& Eigen::PlainObjectBase<Derived>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; Derived = Eigen::Matrix<double, -1, -1>]’
628 | Base::operator=(other.derived());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:605:13: required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; Derived = Eigen::Matrix<double, -1, -1>]’
605 | *this = other.derived();
| ~~~~~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
423 | : Base(other.derived())
| ^
spcov.cpp:15:35: required from here
15 | Eigen::MatrixXd v=m.transpose()*m;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, long int> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, long int> >’
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, long int>’
96 | class SparseMatrix
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:321:17: required from ‘static void Eigen::internal::sparse_sparse_to_dense_product_selector<Lhs, Rhs, ResultType, 1, 0>::run(const Lhs&, const Rhs&, ResultType&) [with Lhs = Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >; Rhs = Eigen::SparseMatrix<double, 0, int>; ResultType = Eigen::Matrix<double, -1, -1>]’
321 | ColMajorLhs lhsCol(lhs);
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseProduct.h:55:103: required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::SparseShape, Eigen::SparseShape, ProductType>::addTo(Dest&, const ActualLhs&, const Rhs&, typename Eigen::internal::enable_if<Eigen::internal::is_same<typename Eigen::internal::evaluator_traits<OtherDerived>::Shape, Eigen::DenseShape>::value, int*>::type*) [with Dest = Eigen::Matrix<double, -1, -1>; ActualLhs = Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >; Lhs = Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >; Rhs = Eigen::SparseMatrix<double, 0, int>; int ProductType = 8; typename Eigen::internal::enable_if<Eigen::internal::is_same<typename Eigen::internal::evaluator_traits<OtherDerived>::Shape, Eigen::DenseShape>::value, int*>::type = int*; typename Eigen::internal::evaluator_traits<OtherDerived>::Shape = Eigen::DenseShape]’
54 | internal::sparse_sparse_to_dense_product_selector<typename remove_all<LhsNested>::type,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | typename remove_all<RhsNested>::type, Dest>::run(lhsNested,rhsNested,dst);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseProduct.h:84:10: required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::SparseShape, Eigen::SparseShape, ProductType>::evalTo(Dest&, const Lhs&, const Rhs&, Eigen::DenseShape) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >; Rhs = Eigen::SparseMatrix<double, 0, int>; int ProductType = 8]’
84 | addTo(dst, lhs, rhs);
| ~~~~~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseProduct.h:43:11: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>]’
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Assign.h:75:28: required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; Derived = Eigen::Matrix<double, -1, -1>]’
75 | internal::call_assignment(derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:628:22: required from ‘Derived& Eigen::PlainObjectBase<Derived>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; Derived = Eigen::Matrix<double, -1, -1>]’
628 | Base::operator=(other.derived());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:605:13: required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; Derived = Eigen::Matrix<double, -1, -1>]’
605 | *this = other.derived();
| ~~~~~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
423 | : Base(other.derived())
| ^
spcov.cpp:15:35: required from here
15 | Eigen::MatrixXd v=m.transpose()*m;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, long int>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, long int> > >’
336 | typedef typename DenseCoeffsBase<Derived,ReadOnlyAccessors>::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, long int> >’
1505 | struct evaluator<SparseMatrix<_Scalar,_Options,_StorageIndex> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:277:18: required from ‘void Eigen::internal::sparse_sparse_to_dense_product_impl(const Lhs&, const Rhs&, ResultType&) [with Lhs = Eigen::SparseMatrix<double, 0, long int>; Rhs = Eigen::SparseMatrix<double, 0, int>; ResultType = Eigen::Matrix<double, -1, -1>]’
277 | evaluator<Lhs> lhsEval(lhs);
| ^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:322:78: required from ‘static void Eigen::internal::sparse_sparse_to_dense_product_selector<Lhs, Rhs, ResultType, 1, 0>::run(const Lhs&, const Rhs&, ResultType&) [with Lhs = Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >; Rhs = Eigen::SparseMatrix<double, 0, int>; ResultType = Eigen::Matrix<double, -1, -1>]’
322 | internal::sparse_sparse_to_dense_product_impl<ColMajorLhs,Rhs,ResultType>(lhsCol, rhs, res);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseProduct.h:55:103: required from ‘static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::SparseShape, Eigen::SparseShape, ProductType>::addTo(Dest&, const ActualLhs&, const Rhs&, typename Eigen::internal::enable_if<Eigen::internal::is_same<typename Eigen::internal::evaluator_traits<OtherDerived>::Shape, Eigen::DenseShape>::value, int*>::type*) [with Dest = Eigen::Matrix<double, -1, -1>; ActualLhs = Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >; Lhs = Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >; Rhs = Eigen::SparseMatrix<double, 0, int>; int ProductType = 8; typename Eigen::internal::enable_if<Eigen::internal::is_same<typename Eigen::internal::evaluator_traits<OtherDerived>::Shape, Eigen::DenseShape>::value, int*>::type = int*; typename Eigen::internal::evaluator_traits<OtherDerived>::Shape = Eigen::DenseShape]’
54 | internal::sparse_sparse_to_dense_product_selector<typename remove_all<LhsNested>::type,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | typename remove_all<RhsNested>::type, Dest>::run(lhsNested,rhsNested,dst);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/SparseProduct.h:84:10: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>]’
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Assign.h:75:28: required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; Derived = Eigen::Matrix<double, -1, -1>]’
75 | internal::call_assignment(derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:628:22: required from ‘Derived& Eigen::PlainObjectBase<Derived>::operator=(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; Derived = Eigen::Matrix<double, -1, -1>]’
628 | Base::operator=(other.derived());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:605:13: required from ‘Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; Derived = Eigen::Matrix<double, -1, -1>]’
605 | *this = other.derived();
| ~~~~~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Transpose<const Eigen::SparseMatrix<double, 0, int> >, Eigen::SparseMatrix<double, 0, int>, 2>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
423 | : Base(other.derived())
| ^
spcov.cpp:15:35: required from here
15 | Eigen::MatrixXd v=m.transpose()*m;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>’
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 3>’
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = sub_assign_op<double, double>]’
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Func = sub_assign_op<double, double>]’
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Derived = Eigen::Matrix<double, -1, -1>]’
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spcov.cpp:16:44: required from here
16 | v-=(cm* cm.transpose())*((double)m.rows());
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >’
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >’
38 | >::type Scalar;
| ^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = sub_assign_op<double, double>]’
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Func = sub_assign_op<double, double>]’
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Derived = Eigen::Matrix<double, -1, -1>]’
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spcov.cpp:16:44: required from here
16 | v-=(cm* cm.transpose())*((double)m.rows());
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >, 0>’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >’
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> > >’
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >’
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:280:48: required from ‘void Eigen::internal::outer_product_selector_run(Dst&, const Lhs&, const Rhs&, const Func&, const false_type&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::Matrix<double, -1, 1>; Rhs = Eigen::Transpose<Eigen::Matrix<double, -1, 1> >; Func = generic_product_impl<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, Eigen::DenseShape, Eigen::DenseShape, 5>::set]’
280 | func(dst.col(j), rhsEval.coeff(Index(0),j) * actual_lhs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:317:41: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = sub_assign_op<double, double>]’
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Func = sub_assign_op<double, double>]’
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Derived = Eigen::Matrix<double, -1, -1>]’
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spcov.cpp:16:44: required from here
16 | v-=(cm* cm.transpose())*((double)m.rows());
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/Core:277:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >; Functor = assign_op<double, double>]’
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >; Func = assign_op<double, double>]’
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Matrix<double, -1, 1> >]’
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = sub_assign_op<double, double>]’
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]’
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Func = sub_assign_op<double, double>]’
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]’
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from ‘Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Product<Eigen::Matrix<double, -1, 1>, Eigen::Transpose<Eigen::Matrix<double, -1, 1> >, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Derived = Eigen::Matrix<double, -1, -1>]’
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spcov.cpp:16:44: required from here
16 | v-=(cm* cm.transpose())*((double)m.rows());
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o conos.so RcppExports.o Rjnmf.o adjustedRand.o checkfunctions.o cpca.o deltacut.o edgeFilter.o edge_rebalancing.o edgeweights.o gradients.o graph_embedding.o largeVis.o propagate_labels.o spcov.o -L. -lpthread -lm -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzNrtOp/R.INSTALL1e13b619a4fc62/conos/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzNrtOp/R.INSTALL1e13b619a4fc62/conos/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzNrtOp/R.INSTALL1e13b619a4fc62/conos/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-conos/00new/conos/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
in method for ‘getPca’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘getPca’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘getPca’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getOverdispersedGenes’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘getOverdispersedGenes’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘getOverdispersedGenes’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getOverdispersedGenes’ with signature ‘"Conos"’: no definition for class “Conos”
in method for ‘getCellNames’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘getCellNames’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘getCellNames’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getCellNames’ with signature ‘"Conos"’: no definition for class “Conos”
in method for ‘getGenes’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘getGenes’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘getGenes’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getGenes’ with signature ‘"Conos"’: no definition for class “Conos”
in method for ‘edgeMat<-’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘edgeMat<-’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘edgeMat<-’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘edgeMat’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘edgeMat’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘edgeMat’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getCountMatrix’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘getCountMatrix’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘getCountMatrix’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getGeneExpression’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘getGeneExpression’ with signature ‘"Conos"’: no definition for class “Conos”
in method for ‘getGeneExpression’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getGeneExpression’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘getRawCountMatrix’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘getRawCountMatrix’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘getRawCountMatrix’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getRawCountMatrix’ with signature ‘"Conos"’: no definition for class “Conos”
in method for ‘getEmbedding’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘getEmbedding’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘getEmbedding’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getEmbedding’ with signature ‘"Conos"’: no definition for class “Conos”
in method for ‘getClustering’ with signature ‘"Pagoda2"’: no definition for class “Pagoda2”
in method for ‘getClustering’ with signature ‘"seurat"’: no definition for class “seurat”
in method for ‘getClustering’ with signature ‘"Seurat"’: no definition for class “Seurat”
in method for ‘getClustering’ with signature ‘"Conos"’: no definition for class “Conos”
Note: wrong number of arguments to '*'
Note: wrong number of arguments to '*'
Note: wrong number of arguments to 'exp'
** help
*** installing help indices
converting help for package ‘conos’
finding HTML links ... done
Conos html
armaCor html
basicSeuratProc html
bestClusterThresholds html
bestClusterTreeThresholds html
buildWijMatrix html
checkCountsWholeNumbers html
convertToPagoda2 html
edgeMat html
estimateWeightEntropyPerCell html
filter.genes.by.cluster.expression html
findSubcommunities html
getBetweenCellTypeCorrectedDE html
getBetweenCellTypeDE html
getCellNames html
getClusterRelationshipConsistency html
getClustering html
getClusteringGroups html
getCountMatrix html
getEmbedding html
getGeneExpression html
getGenes html
getGlobalClusterMarkers html
getNeighborMatrix html
getOdGenesUniformly html
getOverdispersedGenes html
getPca html
getPerCellTypeDE html
getPercentGlobalClusters html
getRawCountMatrix html
getSampleNamePerCell html
greedyModularityCut html
multimulti.community html
multitrap.community html
namedLevels html
namedNames html
p2app4conos html
plotClusterBarplots html
plotClusterBoxPlotsByAppType html
plotComponentVariance html
plotDEheatmap html
plotEmbeddings html
plotSamples html
projectKNNs html
propagateLabelsDiffusion html
quickCCA html
quickCPCA html
quickPlainPCA html
rawMatricesWithCommonGenes html
reexports html
saveConosForScanPy html
saveDEasCSV html
saveDEasJSON html
scanKModularity html
sgdBatches html
small_panel.preprocessed html
stableTreeClusters html
velocityInfoConos html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (conos)