* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘coda4microbiome’ ...
** package ‘coda4microbiome’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘coda4microbiome’
    finding HTML links ... done
    Crohn                                   html  
    Event                                   html  
    Event_time                              html  
    HIV                                     html  
    MSM_HIV                                 html  
    coda4microbiome                         html  
    coda_coxnet                             html  
    coda_glmnet                             html  
    coda_glmnet0                            html  
    coda_glmnet_longitudinal                html  
    coda_glmnet_longitudinal0               html  
    coda_glmnet_longitudinal_null           html  
    coda_glmnet_null                        html  
    ecam_filtered                           html  
    explore_logratios                       html  
    explore_lr_longitudinal                 html  
    explore_zeros                           html  
    filter_longitudinal                     html  
    impute_zeros                            html  
    integralFun                             html  
    logratios_matrix                        html  
    metadata                                html  
    plotMedianCurve                         html  
    plot_prediction                         html  
    plot_riskscore                          html  
    plot_signature                          html  
    plot_signature_curves                   html  
    plot_survcurves                         html  
    sCD14                                   html  
    shannon                                 html  
    shannon_effnum                          html  
    shannon_sim                             html  
    taxanames                               html  
    x                                       html  
    x_Crohn                                 html  
    x_HIV                                   html  
    x_ecam                                  html  
    x_sCD14                                 html  
    y_Crohn                                 html  
    y_HIV                                   html  
    y_sCD14                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coda4microbiome)