* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cocons’ ...
** package ‘cocons’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6AYlGK/R.INSTALL27652918afedc8/cocons/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cocons_full.cpp -o cocons_full.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cocons_taper.cpp -o cocons_taper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/math/special_functions/bessel.hpp:30,
from cocons_types.h:10,
from cocons_taper.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/math/special_functions/detail/bessel_ik.hpp: In function ‘int boost::math::detail::bessel_ik(T, T, T*, T*, int, const Policy&) [with T = long double; Policy = boost::math::policies::policy<boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/math/special_functions/detail/bessel_ik.hpp:421:22: warning: ‘n’ may be used uninitialized [-Wmaybe-uninitialized]
421 | T z = (u + n % 2);
| ~~^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/math/special_functions/detail/bessel_ik.hpp:311:14: note: ‘n’ was declared here
311 | unsigned n, k;
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/math/special_functions/detail/bessel_ik.hpp:421:11: warning: ‘u’ may be used uninitialized [-Wmaybe-uninitialized]
421 | T z = (u + n % 2);
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/math/special_functions/detail/bessel_ik.hpp:308:7: note: ‘u’ was declared here
308 | T u, Iv, Kv, Kv1, Ku, Ku1, fv;
| ^
cocons_taper.cpp: In function ‘Rcpp::NumericVector cov_rns_taper(Rcpp::List&, Rcpp::NumericMatrix&, Rcpp::NumericMatrix&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&)’:
cocons_taper.cpp:282:36: warning: ‘smooth_value’ may be used uninitialized [-Wmaybe-uninitialized]
282 | smooth_s_Q_ij = std::sqrt(8 * smooth_value) * std::sqrt(std::pow(dif_s(0), 2) +
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~
cocons_taper.cpp:176:10: note: ‘smooth_value’ was declared here
176 | double smooth_value;
| ^~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o cocons.so RcppExports.o cocons_full.o cocons_taper.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6AYlGK/R.INSTALL27652918afedc8/cocons/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6AYlGK/R.INSTALL27652918afedc8/cocons/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6AYlGK/R.INSTALL27652918afedc8/cocons/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-cocons/00new/cocons/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘cocons’
finding HTML links ... done
GetNeg2loglikelihood html
GetNeg2loglikelihoodProfile html
GetNeg2loglikelihoodREML html
GetNeg2loglikelihoodTaper html
GetNeg2loglikelihoodTaperProfile html
coco-class html
coco html
cocoOptim html
cocoPredict html
cocoSim html
cocons-package html
cov_rns html
cov_rns_classic html
cov_rns_pred html
cov_rns_taper html
cov_rns_taper_pred html
getAIC html
getBIC html
getBoundaries html
getBoundariesV2 html
getBoundariesV3 html
getCIs html
getCRPS html
getCovMatrix html
getDensityFromDelta html
getDesignMatrix html
getEstims html
getHessian html
getLogScore html
getLoglik html
getModHess html
getModelLists html
getScale html
getSpatEffects html
getSpatMean html
holes html
holes_bm html
is.formula html
plot-methods html
plotOptimInfo html
stripes html
summary-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cocons)