* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cmpsR’ ...
** package ‘cmpsR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-6) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpezM0Aq/R.INSTALL2287c03ef746bc/cmpsR/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c compute_cross_corr.c -o compute_cross_corr.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c example.c -o example.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c local_max.c -o local_max.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c na_trim.c -o na_trim.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o cmpsR.so compute_cross_corr.o example.o init.o local_max.o na_trim.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpezM0Aq/R.INSTALL2287c03ef746bc/cmpsR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpezM0Aq/R.INSTALL2287c03ef746bc/cmpsR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpezM0Aq/R.INSTALL2287c03ef746bc/cmpsR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-cmpsR/00new/cmpsR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cmpsR’
    finding HTML links ... done
    bullets                                 html  
    cmps_na_trim                            html  
    cmps_segment_plot                       html  
    cmps_signature_plot                     html  
    compute_cross_corr                      html  
    compute_diff_phase                      html  
    compute_score_metrics                   html  
    compute_ss_ratio                        html  
    extract_feature_cmps                    html  
    get_CMPS                                html  
    get_all_phases                          html  
    get_ccf4                                html  
    get_ccp                                 html  
    get_ccr_peaks                           html  
    get_seg_scale                           html  
    get_segs                                html  
    local_max_cmps                          html  
    metric_plot_helper                      html  
    na_trim_cmps                            html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cmpsR)