* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘civis’ ... ** package ‘civis’ successfully unpacked and MD5 sums checked ** using staged installation Generating API The environmental variable CIVIS_API_KEY is not set. Add this to your .Renviron or call Sys.setenv(CIVIS_API_KEY = '<api_key>') Generating API failed, reverting to default. ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘civis’ finding HTML links ... done CIVIS_ML_CLASSIFIERS html CIVIS_ML_REGRESSORS html CivisFuture html finding level-2 HTML links ... done admin_list_organizations html aliases_delete html aliases_delete_shares_groups html aliases_delete_shares_users html aliases_get html aliases_get_object_type html aliases_list html aliases_list_dependencies html aliases_list_shares html aliases_patch html aliases_post html aliases_put html aliases_put_shares_groups html aliases_put_shares_users html aliases_put_transfer html announcements_list html await html cancel html civis_file html civis_file_manifest html civis_ml html civis_ml_extra_trees_classifier html civis_ml_extra_trees_regressor html civis_ml_gradient_boosting_classifier html civis_ml_gradient_boosting_regressor html civis_ml_random_forest_classifier html civis_ml_random_forest_regressor html civis_ml_sparse_linear_regressor html civis_ml_sparse_logistic html civis_ml_sparse_ridge_regressor html civis_platform html civis_script html civis_table html civis_to_multifile_csv html clusters_delete_kubernetes_partitions html clusters_get_kubernetes html clusters_get_kubernetes_instance_configs html clusters_get_kubernetes_partitions html clusters_list_kubernetes html clusters_list_kubernetes_deployment_stats html clusters_list_kubernetes_deployments html clusters_list_kubernetes_instance_configs_active_workloads html clusters_list_kubernetes_instance_configs_historical_graphs html clusters_list_kubernetes_instance_configs_user_statistics html clusters_list_kubernetes_partitions html clusters_patch_kubernetes_partitions html clusters_post_kubernetes_partitions html coef.civis_ml html credentials_delete html credentials_delete_shares_groups html credentials_delete_shares_users html credentials_get html credentials_list html credentials_list_dependencies html credentials_list_shares html credentials_list_types html credentials_patch html credentials_post html credentials_post_authenticate html credentials_post_temporary html credentials_put html credentials_put_shares_groups html credentials_put_shares_users html credentials_put_transfer html databases_get html databases_get_schema_privileges html databases_get_table_privilegesschema_name html databases_get_whitelist_ips html databases_list html databases_list_advanced_settings html databases_list_groups html databases_list_schemas html databases_list_tables html databases_list_tables_search html databases_list_users html databases_list_whitelist_ips html databases_patch_advanced_settings html databases_post_schemas_scan html databases_put_advanced_settings html default_credential html download_civis html endpoints_list html enhancements_delete_cass_ncoa_projects html enhancements_delete_cass_ncoa_runs html enhancements_delete_cass_ncoa_shares_groups html enhancements_delete_cass_ncoa_shares_users html enhancements_delete_civis_data_match_projects html enhancements_delete_civis_data_match_runs html enhancements_delete_civis_data_match_shares_groups html enhancements_delete_civis_data_match_shares_users html enhancements_delete_geocode_projects html enhancements_delete_geocode_runs html enhancements_delete_geocode_shares_groups html enhancements_delete_geocode_shares_users html enhancements_get_cass_ncoa html enhancements_get_cass_ncoa_runs html enhancements_get_civis_data_match html enhancements_get_civis_data_match_runs html enhancements_get_geocode html enhancements_get_geocode_runs html enhancements_list html enhancements_list_cass_ncoa_dependencies html enhancements_list_cass_ncoa_projects html enhancements_list_cass_ncoa_runs html enhancements_list_cass_ncoa_runs_logs html enhancements_list_cass_ncoa_runs_outputs html enhancements_list_cass_ncoa_shares html enhancements_list_civis_data_match_dependencies html enhancements_list_civis_data_match_projects html enhancements_list_civis_data_match_runs html enhancements_list_civis_data_match_runs_logs html enhancements_list_civis_data_match_runs_outputs html enhancements_list_civis_data_match_shares html enhancements_list_field_mapping html enhancements_list_geocode_dependencies html enhancements_list_geocode_projects html enhancements_list_geocode_runs html enhancements_list_geocode_runs_logs html enhancements_list_geocode_runs_outputs html enhancements_list_geocode_shares html enhancements_list_types html enhancements_patch_cass_ncoa html enhancements_patch_civis_data_match html enhancements_patch_geocode html enhancements_post_cass_ncoa html enhancements_post_cass_ncoa_cancel html enhancements_post_cass_ncoa_runs html enhancements_post_civis_data_match html enhancements_post_civis_data_match_cancel html enhancements_post_civis_data_match_clone html enhancements_post_civis_data_match_runs html enhancements_post_geocode html enhancements_post_geocode_cancel html enhancements_post_geocode_runs html enhancements_put_cass_ncoa html enhancements_put_cass_ncoa_archive html enhancements_put_cass_ncoa_projects html enhancements_put_cass_ncoa_shares_groups html enhancements_put_cass_ncoa_shares_users html enhancements_put_cass_ncoa_transfer html enhancements_put_civis_data_match html enhancements_put_civis_data_match_archive html enhancements_put_civis_data_match_projects html enhancements_put_civis_data_match_shares_groups html enhancements_put_civis_data_match_shares_users html enhancements_put_civis_data_match_transfer html enhancements_put_geocode html enhancements_put_geocode_archive html enhancements_put_geocode_projects html enhancements_put_geocode_shares_groups html enhancements_put_geocode_shares_users html enhancements_put_geocode_transfer html exports_delete_files_csv_runs html exports_get_files_csv html exports_get_files_csv_runs html exports_list html exports_list_files_csv_runs html exports_list_files_csv_runs_logs html exports_list_files_csv_runs_outputs html exports_patch_files_csv html exports_post_files_csv html exports_post_files_csv_runs html exports_put_files_csv html exports_put_files_csv_archive html fetch_all html fetch_and_generate_client html fetch_logs html fetch_oos_scores html fetch_output_file_ids html fetch_predictions html fetch_until html files_delete_preprocess_csv html files_delete_projects html files_delete_shares_groups html files_delete_shares_users html files_get html files_get_preprocess_csv html files_list_dependencies html files_list_projects html files_list_shares html files_patch html files_patch_preprocess_csv html files_post html files_post_multipart html files_post_multipart_complete html files_post_preprocess_csv html files_put html files_put_preprocess_csv html files_put_preprocess_csv_archive html files_put_projects html files_put_shares_groups html files_put_shares_users html files_put_transfer html generate_client html get_database_id html get_error html get_feature_importance html get_job_type_version html get_metric html get_script_fun html get_status html get_table_id html get_template_ids_all_versions html get_train_template_id html git_repos_delete html git_repos_get html git_repos_list html git_repos_list_refs html git_repos_post html groups_delete html groups_delete_members html groups_delete_shares_groups html groups_delete_shares_users html groups_get html groups_list html groups_list_child_groups html groups_list_shares html groups_patch html groups_post html groups_put html groups_put_members html groups_put_shares_groups html groups_put_shares_users html hist.civis_ml html imports_delete_files_csv html imports_delete_files_csv_runs html imports_delete_files_runs html imports_delete_projects html imports_delete_shares_groups html imports_delete_shares_users html imports_delete_syncs html imports_get html imports_get_batches html imports_get_files_csv html imports_get_files_csv_runs html imports_get_files_runs html imports_list html imports_list_batches html imports_list_dependencies html imports_list_files_csv_runs html imports_list_files_csv_runs_logs html imports_list_files_runs html imports_list_files_runs_logs html imports_list_projects html imports_list_runs html imports_list_runs_logs html imports_list_shares html imports_patch_files_csv html imports_post html imports_post_batches html imports_post_cancel html imports_post_files html imports_post_files_csv html imports_post_files_csv_runs html imports_post_files_runs html imports_post_runs html imports_post_syncs html imports_put html imports_put_archive html imports_put_files_csv html imports_put_files_csv_archive html imports_put_projects html imports_put_shares_groups html imports_put_shares_users html imports_put_syncs html imports_put_syncs_archive html imports_put_transfer html jobs_delete_projects html jobs_delete_runs html jobs_delete_shares_groups html jobs_delete_shares_users html jobs_get html jobs_get_runs html jobs_list html jobs_list_children html jobs_list_dependencies html jobs_list_parents html jobs_list_projects html jobs_list_runs html jobs_list_runs_logs html jobs_list_runs_outputs html jobs_list_shares html jobs_list_workflows html jobs_post_runs html jobs_post_trigger_email html jobs_put_archive html jobs_put_projects html jobs_put_shares_groups html jobs_put_shares_users html jobs_put_transfer html json_values_delete_shares_groups html json_values_delete_shares_users html json_values_get html json_values_list_dependencies html json_values_list_shares html json_values_patch html json_values_post html json_values_put_shares_groups html json_values_put_shares_users html json_values_put_transfer html match_targets_delete_shares_groups html match_targets_delete_shares_users html match_targets_get html match_targets_list html match_targets_list_shares html match_targets_patch html match_targets_post html match_targets_put_archive html match_targets_put_shares_groups html match_targets_put_shares_users html media_delete_optimizations_runs html media_delete_optimizations_shares_groups html media_delete_optimizations_shares_users html media_delete_ratecards_shares_groups html media_delete_ratecards_shares_users html media_delete_spot_orders_shares_groups html media_delete_spot_orders_shares_users html media_get_optimizations html media_get_optimizations_runs html media_get_ratecards html media_get_spot_orders html media_list_dmas html media_list_optimizations html media_list_optimizations_runs html media_list_optimizations_runs_logs html media_list_optimizations_shares html media_list_ratecards html media_list_ratecards_shares html media_list_spot_orders html media_list_spot_orders_shares html media_list_targets html media_patch_optimizations html media_patch_ratecards html media_post_optimizations html media_post_optimizations_clone html media_post_optimizations_runs html media_post_ratecards html media_post_spot_orders html media_put_optimizations_archive html media_put_optimizations_shares_groups html media_put_optimizations_shares_users html media_put_ratecards html media_put_ratecards_archive html media_put_ratecards_shares_groups html media_put_ratecards_shares_users html media_put_spot_orders html media_put_spot_orders_archive html media_put_spot_orders_shares_groups html media_put_spot_orders_shares_users html models_delete_builds html models_delete_projects html models_delete_shares_groups html models_delete_shares_users html models_get html models_get_builds html models_list html models_list_builds html models_list_builds_logs html models_list_dependencies html models_list_projects html models_list_schedules html models_list_shares html models_list_types html models_put_archive html models_put_projects html models_put_shares_groups html models_put_shares_users html models_put_transfer html multipart_upload html notebooks_delete html notebooks_delete_deployments html notebooks_delete_projects html notebooks_delete_shares_groups html notebooks_delete_shares_users html notebooks_get html notebooks_get_deployments html notebooks_get_git_commits html notebooks_list html notebooks_list_dependencies html notebooks_list_deployments html notebooks_list_deployments_logs html notebooks_list_git html notebooks_list_git_commits html notebooks_list_projects html notebooks_list_shares html notebooks_list_update_links html notebooks_patch html notebooks_patch_git html notebooks_post html notebooks_post_clone html notebooks_post_deployments html notebooks_post_git_checkout html notebooks_post_git_checkout_latest html notebooks_post_git_commits html notebooks_put html notebooks_put_archive html notebooks_put_git html notebooks_put_projects html notebooks_put_shares_groups html notebooks_put_shares_users html notebooks_put_transfer html notifications_list html ontology_list html permission_sets_delete_resources html permission_sets_delete_resources_shares_groups html permission_sets_delete_resources_shares_users html permission_sets_delete_shares_groups html permission_sets_delete_shares_users html permission_sets_get html permission_sets_get_resources html permission_sets_list html permission_sets_list_dependencies html permission_sets_list_resources html permission_sets_list_resources_shares html permission_sets_list_shares html permission_sets_list_users_permissions html permission_sets_patch html permission_sets_patch_resources html permission_sets_post html permission_sets_post_resources html permission_sets_put html permission_sets_put_archive html permission_sets_put_resources_shares_groups html permission_sets_put_resources_shares_users html permission_sets_put_shares_groups html permission_sets_put_shares_users html permission_sets_put_transfer html plot.civis_ml_classifier html plot.civis_ml_regressor html predictions_get html predictions_list html predictions_list_schedules html print.civis_api html projects_delete html projects_delete_parent_projects html projects_delete_shares_groups html projects_delete_shares_users html projects_get html projects_list html projects_list_dependencies html projects_list_parent_projects html projects_list_shares html projects_post html projects_post_clone html projects_put html projects_put_archive html projects_put_auto_share html projects_put_parent_projects html projects_put_shares_groups html projects_put_shares_users html projects_put_transfer html publish_addin html publish_html html publish_rmd html queries_delete html queries_delete_runs html queries_get html queries_get_runs html queries_list html queries_list_runs html queries_list_runs_logs html queries_post html queries_post_runs html queries_put_scripts html query_civis html query_civis_file html read_civis html refresh_table html remote_hosts_delete_shares_groups html remote_hosts_delete_shares_users html remote_hosts_get html remote_hosts_list html remote_hosts_list_data_sets html remote_hosts_list_shares html remote_hosts_patch html remote_hosts_post html remote_hosts_post_authenticate html remote_hosts_put html remote_hosts_put_shares_groups html remote_hosts_put_shares_users html reports_delete_grants html reports_delete_projects html reports_delete_services_projects html reports_delete_services_shares_groups html reports_delete_services_shares_users html reports_delete_shares_groups html reports_delete_shares_users html reports_get html reports_get_git_commits html reports_get_services html reports_list html reports_list_dependencies html reports_list_git html reports_list_git_commits html reports_list_projects html reports_list_services_dependencies html reports_list_services_projects html reports_list_services_shares html reports_list_shares html reports_patch html reports_patch_git html reports_patch_services html reports_post html reports_post_git_checkout html reports_post_git_checkout_latest html reports_post_git_commits html reports_post_grants html reports_post_refresh html reports_post_services html reports_put_archive html reports_put_git html reports_put_projects html reports_put_services_archive html reports_put_services_projects html reports_put_services_shares_groups html reports_put_services_shares_users html reports_put_services_transfer html reports_put_shares_groups html reports_put_shares_users html reports_put_transfer html resolved html roles_list html run_civis html run_template html saml_service_providers_delete_shares_groups html saml_service_providers_delete_shares_users html saml_service_providers_list_shares html saml_service_providers_put_shares_groups html saml_service_providers_put_shares_users html scripts_delete html scripts_delete_containers html scripts_delete_containers_projects html scripts_delete_containers_runs html scripts_delete_containers_shares_groups html scripts_delete_containers_shares_users html scripts_delete_custom html scripts_delete_custom_projects html scripts_delete_custom_runs html scripts_delete_custom_shares_groups html scripts_delete_custom_shares_users html scripts_delete_javascript html scripts_delete_javascript_projects html scripts_delete_javascript_runs html scripts_delete_javascript_shares_groups html scripts_delete_javascript_shares_users html scripts_delete_python3 html scripts_delete_python3_projects html scripts_delete_python3_runs html scripts_delete_python3_shares_groups html scripts_delete_python3_shares_users html scripts_delete_r html scripts_delete_r_projects html scripts_delete_r_runs html scripts_delete_r_shares_groups html scripts_delete_r_shares_users html scripts_delete_sql html scripts_delete_sql_projects html scripts_delete_sql_runs html scripts_delete_sql_shares_groups html scripts_delete_sql_shares_users html scripts_get html scripts_get_containers html scripts_get_containers_runs html scripts_get_custom html scripts_get_custom_runs html scripts_get_javascript html scripts_get_javascript_git_commits html scripts_get_javascript_runs html scripts_get_python3 html scripts_get_python3_git_commits html scripts_get_python3_runs html scripts_get_r html scripts_get_r_git_commits html scripts_get_r_runs html scripts_get_sql html scripts_get_sql_git_commits html scripts_get_sql_runs html scripts_list html scripts_list_containers_dependencies html scripts_list_containers_projects html scripts_list_containers_runs html scripts_list_containers_runs_logs html scripts_list_containers_runs_outputs html scripts_list_containers_shares html scripts_list_custom html scripts_list_custom_dependencies html scripts_list_custom_projects html scripts_list_custom_runs html scripts_list_custom_runs_logs html scripts_list_custom_runs_outputs html scripts_list_custom_shares html scripts_list_history html scripts_list_javascript_dependencies html scripts_list_javascript_git html scripts_list_javascript_git_commits html scripts_list_javascript_projects html scripts_list_javascript_runs html scripts_list_javascript_runs_logs html scripts_list_javascript_runs_outputs html scripts_list_javascript_shares html scripts_list_python3_dependencies html scripts_list_python3_git html scripts_list_python3_git_commits html scripts_list_python3_projects html scripts_list_python3_runs html scripts_list_python3_runs_logs html scripts_list_python3_runs_outputs html scripts_list_python3_shares html scripts_list_r_dependencies html scripts_list_r_git html scripts_list_r_git_commits html scripts_list_r_projects html scripts_list_r_runs html scripts_list_r_runs_logs html scripts_list_r_runs_outputs html scripts_list_r_shares html scripts_list_sql_dependencies html scripts_list_sql_git html scripts_list_sql_git_commits html scripts_list_sql_projects html scripts_list_sql_runs html scripts_list_sql_runs_logs html scripts_list_sql_runs_outputs html scripts_list_sql_shares html scripts_list_types html scripts_patch html scripts_patch_container_runs html scripts_patch_containers html scripts_patch_custom html scripts_patch_javascript html scripts_patch_javascript_git html scripts_patch_javascript_runs html scripts_patch_python3 html scripts_patch_python3_git html scripts_patch_python3_runs html scripts_patch_r html scripts_patch_r_git html scripts_patch_r_runs html scripts_patch_sql html scripts_patch_sql_git html scripts_patch_sql_runs html scripts_post html scripts_post_cancel html scripts_post_containers html scripts_post_containers_clone html scripts_post_containers_runs html scripts_post_containers_runs_logs html scripts_post_containers_runs_outputs html scripts_post_custom html scripts_post_custom_clone html scripts_post_custom_runs html scripts_post_custom_runs_outputs html scripts_post_javascript html scripts_post_javascript_clone html scripts_post_javascript_git_checkout html scripts_post_javascript_git_checkout_latest html scripts_post_javascript_git_commits html scripts_post_javascript_runs html scripts_post_javascript_runs_outputs html scripts_post_python3 html scripts_post_python3_clone html scripts_post_python3_git_checkout html scripts_post_python3_git_checkout_latest html scripts_post_python3_git_commits html scripts_post_python3_runs html scripts_post_python3_runs_outputs html scripts_post_r html scripts_post_r_clone html scripts_post_r_git_checkout html scripts_post_r_git_checkout_latest html scripts_post_r_git_commits html scripts_post_r_runs html scripts_post_r_runs_outputs html scripts_post_run html scripts_post_sql html scripts_post_sql_clone html scripts_post_sql_git_checkout html scripts_post_sql_git_checkout_latest html scripts_post_sql_git_commits html scripts_post_sql_runs html scripts_put_containers html scripts_put_containers_archive html scripts_put_containers_projects html scripts_put_containers_shares_groups html scripts_put_containers_shares_users html scripts_put_containers_transfer html scripts_put_custom html scripts_put_custom_archive html scripts_put_custom_projects html scripts_put_custom_shares_groups html scripts_put_custom_shares_users html scripts_put_custom_transfer html scripts_put_javascript html scripts_put_javascript_archive html scripts_put_javascript_git html scripts_put_javascript_projects html scripts_put_javascript_shares_groups html scripts_put_javascript_shares_users html scripts_put_javascript_transfer html scripts_put_python3 html scripts_put_python3_archive html scripts_put_python3_git html scripts_put_python3_projects html scripts_put_python3_shares_groups html scripts_put_python3_shares_users html scripts_put_python3_transfer html scripts_put_r html scripts_put_r_archive html scripts_put_r_git html scripts_put_r_projects html scripts_put_r_shares_groups html scripts_put_r_shares_users html scripts_put_r_transfer html scripts_put_sql html scripts_put_sql_archive html scripts_put_sql_git html scripts_put_sql_projects html scripts_put_sql_shares_groups html scripts_put_sql_shares_users html scripts_put_sql_transfer html search_list html search_list_queries html search_list_types html services_delete html services_delete_deployments html services_delete_projects html services_delete_shares_groups html services_delete_shares_users html services_delete_tokens html services_get html services_get_deployments html services_list html services_list_dependencies html services_list_deployments html services_list_deployments_logs html services_list_projects html services_list_shares html services_list_tokens html services_patch html services_post html services_post_clone html services_post_deployments html services_post_redeploy html services_post_tokens html services_put html services_put_archive html services_put_projects html services_put_shares_groups html services_put_shares_users html services_put_transfer html sql html stash_local_dataframe html storage_hosts_delete html storage_hosts_delete_shares_groups html storage_hosts_delete_shares_users html storage_hosts_get html storage_hosts_list html storage_hosts_list_dependencies html storage_hosts_list_shares html storage_hosts_patch html storage_hosts_post html storage_hosts_put html storage_hosts_put_shares_groups html storage_hosts_put_shares_users html storage_hosts_put_transfer html table_tags_delete html table_tags_get html table_tags_list html table_tags_post html tables_delete_projects html tables_delete_tags html tables_get html tables_get_enhancements_cass_ncoa html tables_get_enhancements_geocodings html tables_list html tables_list_columns html tables_list_projects html tables_patch html tables_post_enhancements_cass_ncoa html tables_post_enhancements_geocodings html tables_post_refresh html tables_post_scan html tables_put_projects html tables_put_tags html templates_delete_reports html templates_delete_reports_shares_groups html templates_delete_reports_shares_users html templates_delete_scripts html templates_delete_scripts_projects html templates_delete_scripts_shares_groups html templates_delete_scripts_shares_users html templates_get_reports html templates_get_scripts html templates_list_reports html templates_list_reports_dependencies html templates_list_reports_shares html templates_list_scripts html templates_list_scripts_dependencies html templates_list_scripts_projects html templates_list_scripts_shares html templates_patch_reports html templates_patch_scripts html templates_post_reports html templates_post_scripts html templates_put_reports html templates_put_reports_shares_groups html templates_put_reports_shares_users html templates_put_reports_transfer html templates_put_scripts html templates_put_scripts_projects html templates_put_scripts_shares_groups html templates_put_scripts_shares_users html templates_put_scripts_transfer html transfer_table html users_delete_2fa html users_delete_api_keys html users_delete_me_favorites html users_delete_me_superadmin html users_delete_sessions html users_get html users_get_api_keys html users_get_me_themes html users_list html users_list_api_keys html users_list_me html users_list_me_favorites html users_list_me_themes html users_patch html users_patch_me html users_post html users_post_api_keys html users_post_me_favorites html users_post_me_superadmin html users_post_unsuspend html with_tempfile html workflows_delete_projects html workflows_delete_shares_groups html workflows_delete_shares_users html workflows_get html workflows_get_executions html workflows_get_executions_tasks html workflows_get_git_commits html workflows_list html workflows_list_dependencies html workflows_list_executions html workflows_list_git html workflows_list_git_commits html workflows_list_projects html workflows_list_shares html workflows_patch html workflows_patch_git html workflows_post html workflows_post_clone html workflows_post_executions html workflows_post_executions_cancel html workflows_post_executions_resume html workflows_post_executions_retry html workflows_post_git_checkout html workflows_post_git_checkout_latest html workflows_post_git_commits html workflows_put html workflows_put_archive html workflows_put_git html workflows_put_projects html workflows_put_shares_groups html workflows_put_shares_users html workflows_put_transfer html write_chunks html write_civis html write_civis_file html write_job_output html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (civis)