* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘chicane’ ...
** package ‘chicane’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘chicane’
    finding HTML links ... done
    add.covariates                          html  
    add.fragment.coordinates                html  
    bedtools.installed                      html  
    bre80                                   html  
    check.model.numerical.fit               html  
    check.split.data.numerical.fit          html  
    chicane                                 html  
    combine.replicates                      html  
    compare.replicates                      html  
    convert.bam                             html  
    convert.hicup.digest.bed                html  
    convert.standard.format                 html  
    convert.to.one.based                    html  
    create.locus.plot                       html  
    create.modelfit.plot                    html  
    distance.bin                            html  
    distance.split                          html  
    fill.in.zeros                           html  
    filter.fragments                        html  
    fit.glm                                 html  
    fit.model                               html  
    get.combination.count                   html  
    get.components                          html  
    get.distance                            html  
    get.id.components                       html  
    get.interaction.id                      html  
    get.trans.counts                        html  
    is.glm.nb.maxiter.warning               html  
    is.glm.nb.theta.error                   html  
    is.glm.nb.theta.warning                 html  
    model.rows.sanity.check                 html  
    model.try.catch                         html  
    multiple.testing.correct                html  
    prepare.data                            html  
    read.bed                                html  
    run.model.fitting                       html  
    smart.split                             html  
    stratified.enrichment.sample            html  
    test.enrichment                         html  
    verify.interaction.data                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (chicane)