* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bnlearn’ ...
** package ‘bnlearn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIqP3dv/R.INSTALL12f9da204c33e9/bnlearn/src'
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arcs/arcs2amat.c -o arcs/arcs2amat.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arcs/arcs2elist.c -o arcs/arcs2elist.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arcs/bind.c -o arcs/bind.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arcs/filter.arcs.c -o arcs/filter.arcs.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arcs/hash.c -o arcs/hash.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arcs/is.row.equal.c -o arcs/is.row.equal.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bnlearn/bayesian.network.c -o bnlearn/bayesian.network.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bnlearn/bn.recovery.c -o bnlearn/bn.recovery.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bnlearn/cache.structure.c -o bnlearn/cache.structure.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bnlearn/cextend.c -o bnlearn/cextend.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bnlearn/colliders.c -o bnlearn/colliders.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bnlearn/cpdag.c -o bnlearn/cpdag.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bnlearn/fitted.c -o bnlearn/fitted.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bnlearn/nparams.c -o bnlearn/nparams.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bnlearn/shd.c -o bnlearn/shd.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/allocations.c -o core/allocations.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/contingency.tables.c -o core/contingency.tables.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/correlation.c -o core/correlation.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/covariance.matrix.c -o core/covariance.matrix.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/data.table.c -o core/data.table.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/math.functions.c -o core/math.functions.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/moments.c -o core/moments.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/sampling.c -o core/sampling.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/sets.c -o core/sets.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core/uppertriangular.c -o core/uppertriangular.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fitted/enums.c -o fitted/enums.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fitted/fitted.c -o fitted/fitted.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fitted/nparams.c -o fitted/nparams.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fitted/rinterface/nparams.c -o fitted/rinterface/nparams.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c foreign/parse.c -o foreign/parse.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c globals.c -o globals.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c graphs/acyclic.c -o graphs/acyclic.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c graphs/is.dag.c -o graphs/is.dag.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c graphs/path.c -o graphs/path.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c graphs/pdag2dag.c -o graphs/pdag2dag.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c graphs/random/graph.generation.c -o graphs/random/graph.generation.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c graphs/topological.ordering.c -o graphs/topological.ordering.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/likelihood.weighting.c -o inference/likelihood.weighting.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/loglikelihood/common.c -o inference/loglikelihood/common.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/loglikelihood/discrete.c -o inference/loglikelihood/discrete.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/loglikelihood/gaussian.c -o inference/loglikelihood/gaussian.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/loglikelihood/conditional.gaussian.c -o inference/loglikelihood/conditional.gaussian.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/loss.c -o inference/loss.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/rbn.c -o inference/rbn.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/rinterface/loglikelihood.c -o inference/rinterface/loglikelihood.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/rinterface/cpdist.c -o inference/rinterface/cpdist.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/rinterface/rbn.c -o inference/rinterface/rbn.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inference/rinterface/likelihood.weighting.c -o inference/rinterface/likelihood.weighting.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c learning/averaging/averaging.c -o learning/averaging/averaging.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c learning/averaging/bootstrap.c -o learning/averaging/bootstrap.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c learning/local/mi.matrix.c -o learning/local/mi.matrix.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c learning/score/hc.cache.lookup.c -o learning/score/hc.cache.lookup.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c learning/score/score.delta.c -o learning/score/score.delta.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c learning/score/tabu.c -o learning/score/tabu.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c math/conditional.least.squares.c -o math/conditional.least.squares.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c math/least.squares.c -o math/least.squares.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c math/linear.algebra.c -o math/linear.algebra.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c minimal/common.c -o minimal/common.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c minimal/data.frame.c -o minimal/data.frame.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c minimal/strings.c -o minimal/strings.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c minimal/table.c -o minimal/table.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c minimal/tiers.c -o minimal/tiers.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c minimal/unique.c -o minimal/unique.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c parameters/discrete/classic_discrete.c -o parameters/discrete/classic_discrete.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c parameters/discrete/hierarchical_dirichlet.c -o parameters/discrete/hierarchical_dirichlet.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c parameters/rinterface/classic_discrete.c -o parameters/rinterface/classic_discrete.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c parameters/rinterface/hierarchical_dirichlet.c -o parameters/rinterface/hierarchical_dirichlet.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c parameters/rinterface/mixture_ordinary_least_squares.c -o parameters/rinterface/mixture_ordinary_least_squares.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c parameters/rinterface/ordinary_least_squares.c -o parameters/rinterface/ordinary_least_squares.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c predict/map.lw.c -o predict/map.lw.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c predict/predict.c -o predict/predict.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c preprocessing/dedup.c -o preprocessing/dedup.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c preprocessing/discretize.c -o preprocessing/discretize.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c preprocessing/enums.c -o preprocessing/enums.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sanitization/cg.assumptions.c -o sanitization/cg.assumptions.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sanitization/covariance.c -o sanitization/covariance.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sanitization/data.c -o sanitization/data.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/alpha.star.c -o scores/alpha.star.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/cg.loglikelihood.c -o scores/cg.loglikelihood.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/cg.predictive.loglikelihood.c -o scores/cg.predictive.loglikelihood.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/cg.nal.c -o scores/cg.nal.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/custom.score.c -o scores/custom.score.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/dirichlet.averaged.posterior.c -o scores/dirichlet.averaged.posterior.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/dirichlet.posterior.c -o scores/dirichlet.posterior.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/discrete.loglikelihood.c -o scores/discrete.loglikelihood.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/discrete.nal.c -o scores/discrete.nal.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/discrete.predictive.loglikelihood.c -o scores/discrete.predictive.loglikelihood.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/enum.c -o scores/enum.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/gaussian.loglikelihood.c -o scores/gaussian.loglikelihood.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/gaussian.nal.c -o scores/gaussian.nal.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/gaussian.predictive.loglikelihood.c -o scores/gaussian.predictive.loglikelihood.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/graph.priors.c -o scores/graph.priors.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/nml_regret.c -o scores/nml_regret.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/nml_regret_table.c -o scores/nml_regret_table.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/normalized.maximum.likelihood.c -o scores/normalized.maximum.likelihood.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/per.node.score.c -o scores/per.node.score.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scores/wishart.posterior.c -o scores/wishart.posterior.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test.counter.c -o test.counter.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/conditional.gaussian/cg.mutual.information.c -o tests/conditional.gaussian/cg.mutual.information.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/discrete/df.adjust.c -o tests/discrete/df.adjust.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/discrete/discrete.tests.c -o tests/discrete/discrete.tests.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/discrete/jonckheere.c -o tests/discrete/jonckheere.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/discrete/shrinkage.c -o tests/discrete/shrinkage.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/enums.c -o tests/enums.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/gaussian/df.adjust.c -o tests/gaussian/df.adjust.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/gaussian/gaussian.tests.c -o tests/gaussian/gaussian.tests.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/gaussian/shrinkage.c -o tests/gaussian/shrinkage.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/omnibus/custom.test.c -o tests/omnibus/custom.test.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/patterns/allsubs.test.c -o tests/patterns/allsubs.test.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/patterns/ctest.c -o tests/patterns/ctest.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/patterns/roundrobin.test.c -o tests/patterns/roundrobin.test.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/patterns/utest.c -o tests/patterns/utest.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/permutation/discrete.monte.carlo.c -o tests/permutation/discrete.monte.carlo.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/permutation/gaussian.monte.carlo.c -o tests/permutation/gaussian.monte.carlo.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/rinterface/allsubs.test.c -o tests/rinterface/allsubs.test.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/rinterface/ctest.c -o tests/rinterface/ctest.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/rinterface/htest.c -o tests/rinterface/htest.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/rinterface/indep.test.c -o tests/rinterface/indep.test.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/rinterface/roundrobin.test.c -o tests/rinterface/roundrobin.test.o
gcc-14 -std=gnu17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tests/rinterface/utest.c -o tests/rinterface/utest.o
gcc-14 -std=gnu17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bnlearn.so arcs/arcs2amat.o arcs/arcs2elist.o arcs/bind.o arcs/filter.arcs.o arcs/hash.o arcs/is.row.equal.o bnlearn/bayesian.network.o bnlearn/bn.recovery.o bnlearn/cache.structure.o bnlearn/cextend.o bnlearn/colliders.o bnlearn/cpdag.o bnlearn/fitted.o bnlearn/nparams.o bnlearn/shd.o core/allocations.o core/contingency.tables.o core/correlation.o core/covariance.matrix.o core/data.table.o core/math.functions.o core/moments.o core/sampling.o core/sets.o core/uppertriangular.o fitted/enums.o fitted/fitted.o fitted/nparams.o fitted/rinterface/nparams.o foreign/parse.o globals.o graphs/acyclic.o graphs/is.dag.o graphs/path.o graphs/pdag2dag.o graphs/random/graph.generation.o graphs/topological.ordering.o inference/likelihood.weighting.o inference/loglikelihood/common.o inference/loglikelihood/discrete.o inference/loglikelihood/gaussian.o inference/loglikelihood/conditional.gaussian.o inference/loss.o inference/rbn.o inference/rinterface/loglikelihood.o inference/rinterface/cpdist.o inference/rinterface/rbn.o inference/rinterface/likelihood.weighting.o learning/averaging/averaging.o learning/averaging/bootstrap.o learning/local/mi.matrix.o learning/score/hc.cache.lookup.o learning/score/score.delta.o learning/score/tabu.o math/conditional.least.squares.o math/least.squares.o math/linear.algebra.o minimal/common.o minimal/data.frame.o minimal/strings.o minimal/table.o minimal/tiers.o minimal/unique.o parameters/discrete/classic_discrete.o parameters/discrete/hierarchical_dirichlet.o parameters/rinterface/classic_discrete.o parameters/rinterface/hierarchical_dirichlet.o parameters/rinterface/mixture_ordinary_least_squares.o parameters/rinterface/ordinary_least_squares.o predict/map.lw.o predict/predict.o preprocessing/dedup.o preprocessing/discretize.o preprocessing/enums.o sanitization/cg.assumptions.o sanitization/covariance.o sanitization/data.o scores/alpha.star.o scores/cg.loglikelihood.o scores/cg.predictive.loglikelihood.o scores/cg.nal.o scores/custom.score.o scores/dirichlet.averaged.posterior.o scores/dirichlet.posterior.o scores/discrete.loglikelihood.o scores/discrete.nal.o scores/discrete.predictive.loglikelihood.o scores/enum.o scores/gaussian.loglikelihood.o scores/gaussian.nal.o scores/gaussian.predictive.loglikelihood.o scores/graph.priors.o scores/nml_regret.o scores/nml_regret_table.o scores/normalized.maximum.likelihood.o scores/per.node.score.o scores/wishart.posterior.o test.counter.o tests/conditional.gaussian/cg.mutual.information.o tests/discrete/df.adjust.o tests/discrete/discrete.tests.o tests/discrete/jonckheere.o tests/discrete/shrinkage.o tests/enums.o tests/gaussian/df.adjust.o tests/gaussian/gaussian.tests.o tests/gaussian/shrinkage.o tests/omnibus/custom.test.o tests/patterns/allsubs.test.o tests/patterns/ctest.o tests/patterns/roundrobin.test.o tests/patterns/utest.o tests/permutation/discrete.monte.carlo.o tests/permutation/gaussian.monte.carlo.o tests/rinterface/allsubs.test.o tests/rinterface/ctest.o tests/rinterface/htest.o tests/rinterface/indep.test.o tests/rinterface/roundrobin.test.o tests/rinterface/utest.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIqP3dv/R.INSTALL12f9da204c33e9/bnlearn/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIqP3dv/R.INSTALL12f9da204c33e9/bnlearn/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIqP3dv/R.INSTALL12f9da204c33e9/bnlearn/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bnlearn/00new/bnlearn/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘bnlearn’
finding HTML links ... done
alarm html
alpha.star html
arc.strength html
arcops html
asia html
bayesian.network.classifiers html
bf html
blacklist html
bn.class html
bn.cv html
bn.fit html
bn.fit.class html
bn.fit.methods html
bn.fit.plots html
bn.kcv.class html
bn.strength-class html
bnboot html
bnlearn-package html
ci.test html
clgaussian-test html
compare html
conditional.independence.tests html
configs html
constraint html
coronary html
count.graphs html
cpdag html
cpquery html
dsep html
foreign html
gRain html
gaussian-test html
graph html
graphgen html
graphpkg html
graphviz.chart html
graphviz.plot html
hailfinder html
hc html
hybrid html
igraphpkg html
insurance html
kl html
learn html
learning-test html
lizards html
marks html
mb html
mi.matrix html
modelstring html
mvnorm html
naive.bayes html
network.scores html
nodeops html
ordering html
pcalg html
plot.bn html
plot.bn.strength html
predict.and.impute html
preprocessing html
rbn html
score html
statspkg html
strength.plot html
structural.em html
structure.learning html
test.counter html
whitelists.and.blacklists html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bnlearn)