* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘biomartr’ ...
** package ‘biomartr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘biomartr’
    finding HTML links ... done
    biomart                                 html  
    biomartr-package                        html  
    cachedir                                html  
    cachedir_set                            html  
    check_annotation_biomartr               html  
    download.database                       html  
    download.database.all                   html  
    ensembl_divisions                       html  
    get.ensembl.info                        html  
    getAssemblyStats                        html  
    getAttributes                           html  
    getBio                                  html  
    getBioSet                               html  
    getCDS                                  html  
    getCDSSet                               html  
    getCollection                           html  
    getCollectionSet                        html  
    getDatasets                             html  
    getENSEMBL                              html  
    getENSEMBL.Seq                          html  
    getENSEMBL.gtf                          html  
    getENSEMBLGENOMESInfo                   html  
    getENSEMBLInfo                          html  
    getFilters                              html  
    getGENOMEREPORT                         html  
    getGFF                                  html  
    getGFFSet                               html  
    getGO                                   html  
    getGTF                                  html  
    getGenome                               html  
    getGenomeSet                            html  
    getGroups                               html  
    getKingdomAssemblySummary               html  
    getKingdoms                             html  
    getMarts                                html  
    getMetaGenomeAnnotations                html  
    getMetaGenomeSummary                    html  
    getMetaGenomes                          html  
    getProteome                             html  
    getProteomeSet                          html  
    getRNA                                  html  
    getRNASet                               html  
    getReleases                             html  
    getRepeatMasker                         html  
    getSummaryFile                          html  
    getUniProtInfo                          html  
    getUniProtSTATS                         html  
    is.genome.available                     html  
    listDatabases                           html  
    listGenomes                             html  
    listGroups                              html  
    listKingdoms                            html  
    listMetaGenomes                         html  
    meta.retrieval                          html  
    meta.retrieval.all                      html  
    organismAttributes                      html  
    organismBM                              html  
    organismFilters                         html  
    read_assemblystats                      html  
    read_cds                                html  
    read_genome                             html  
    read_gff                                html  
    read_proteome                           html  
    read_rm                                 html  
    read_rna                                html  
    refseqOrganisms                         html  
    summary_cds                             html  
    summary_genome                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biomartr)