* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bigtcr’ ...
** package ‘bigtcr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-6) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwAQOaq/R.INSTALLd223550197294/bigtcr/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c bigap.c -o bigap.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c bigtcr_init.c -o bigtcr_init.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bigtcr.so bigap.o bigtcr_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwAQOaq/R.INSTALLd223550197294/bigtcr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwAQOaq/R.INSTALLd223550197294/bigtcr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwAQOaq/R.INSTALLd223550197294/bigtcr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bigtcr/00new/bigtcr/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘bigtcr’
    finding HTML links ... done
    bigtcr-package                          html  
    get.ccif                                html  
    get.gap.ccif                            html  
    get.gap.kt                              html  
    get.gap.pval                            html  
    get.kendalltau                          html  
    get.pval                                html  
    pancancer                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bigtcr)