* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘beyondWhittle’ ... ** package ‘beyondWhittle’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmps1qWUR/R.INSTALL3ea9264d684311/beyondWhittle/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c a_gamma_process_prior.cpp -o a_gamma_process_prior.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arma.cpp -o arma.o arma.cpp: In function ‘Rcpp::NumericMatrix pacf2AR(Rcpp::NumericVector)’: arma.cpp:34:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 34 | for (int r=1; r <= p-j; ++r) { | ~~^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bernstein_gamma_psd.cpp -o bernstein_gamma_psd.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gibbs_np_help.cpp -o gibbs_np_help.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gibbs_vnp_algorithm.cpp -o gibbs_vnp_algorithm.o gibbs_vnp_algorithm.cpp: In function ‘Rcpp::List gibbs_multivariate_nuisance_cpp(arma::mat, Rcpp::IntegerVector, arma::cx_mat, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, int, arma::vec, arma::vec, arma::mat, arma::vec, double, double, arma::cx_mat, int, int, double, bool, int, double, Rcpp::List)’: gibbs_vnp_algorithm.cpp:51:13: warning: unused variable ‘n’ [-Wunused-variable] 51 | const int n=data.n_rows; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gibbs_vnp_help.cpp -o gibbs_vnp_help.o gibbs_vnp_help.cpp: In function ‘double llike_whittle(const arma::cx_mat&, const arma::cx_cube&)’: gibbs_vnp_help.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 56 | for (unsigned j=1; j < N-1; ++j) { | ~~^~~~~ gibbs_vnp_help.cpp: In function ‘arma::cx_mat mdft_cpp(const arma::mat&)’: gibbs_vnp_help.cpp:94:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 94 | for (unsigned j=1; j<n; ++j) { | ~^~ gibbs_vnp_help.cpp: In function ‘void mean_center(arma::mat&)’: gibbs_vnp_help.cpp:113:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 113 | for (int j=0; j<x.n_rows; ++j) { | ~^~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix_cube.cpp -o matrix_cube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c misc.cpp -o misc.o misc.cpp: In function ‘Rcpp::NumericMatrix acvMatrix(Rcpp::NumericVector)’: misc.cpp:13:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 13 | for (int i=0; i < p; ++i) { | ~~^~~ misc.cpp:14:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 14 | for (int j=0; j < p; ++j) { | ~~^~~ misc.cpp: In function ‘arma::mat acvBlockMatrix(arma::mat)’: misc.cpp:30:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 30 | for (int i=0; i < p; ++i) { | ~~^~~ misc.cpp:31:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 31 | for (int j=0; j < p; ++j) { | ~~^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c qpsd_cal_cpp_expedited.cpp -o qpsd_cal_cpp_expedited.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c unit_trace.cpp -o unit_trace.o unit_trace.cpp: In function ‘arma::cx_mat unit_trace_U_from_phi_cpp(const arma::vec&)’: unit_trace.cpp:38:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 38 | for (int i=0; i<d; ++i) { | ~^~ unit_trace.cpp: In function ‘arma::cx_mat unit_trace_L_from_x(arma::vec)’: unit_trace.cpp:88:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 88 | for (int i=0; i<d; ++i) { | ~^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c varma.cpp -o varma.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o beyondWhittle.so RcppExports.o a_gamma_process_prior.o arma.o bernstein_gamma_psd.o gibbs_np_help.o gibbs_vnp_algorithm.o gibbs_vnp_help.o matrix_cube.o misc.o qpsd_cal_cpp_expedited.o registerDynamicSymbol.o unit_trace.o varma.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmps1qWUR/R.INSTALL3ea9264d684311/beyondWhittle/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmps1qWUR/R.INSTALL3ea9264d684311/beyondWhittle/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmps1qWUR/R.INSTALL3ea9264d684311/beyondWhittle/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-beyondWhittle/00new/beyondWhittle/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘beyondWhittle’ finding HTML links ... done Adj html PSIwgt html VARMAcov_muted html VAR_regressor_matrix html acceptanceRate html acvBlockMatrix html acvMatrix html arma_conditional html bayes_factor html bayes_factor.bdp_dw_result html bdp_dw_bayes_factor_k1 html bdp_dw_est_post_stats html bdp_dw_mcmc html bdp_dw_mcmc_params_gen html bdp_dw_prior_params_gen html betaBasis_k html betaBasis_k_dw html beyondWhittle-package html center html coarsened_bernstein html coarsened_bernstein_i html complexValuedPsd html cube_from_NumericVector html cx_cube_from_ComplexVector html dbList html dbList_dw_Bern html dbList_dw_Bern_for_lambda html densityMixture html epsilon_var html fast_ft html fast_ift html fast_mean html fourier_freq html genEpsARMAC html get_U_cpp html get_f_matrix html gibbs_AR_nuisance_intern html gibbs_VAR_nuisance_intern html gibbs_ar html gibbs_bdp_dw html gibbs_multivariate_nuisance html gibbs_multivariate_nuisance_cpp html gibbs_np html gibbs_npc html gibbs_nuisance html gibbs_var html gibbs_vnp html hasEigenValueSmallerZero html is_hpd html is_quadratic html is_spd html lik_ar html llike html llike_AR html llike_dw html llike_var html llike_var_full html llike_var_partial html local_moving_FT_zigzag html logDet_stickBreaking html logfuller html lpost html lpost_AR html lprior html lprior_AR html lprior_dw html mdft html midft html missingValues_str_help html mixtureWeight html mpdgrm html my_rdirichlet html nll_norm html omegaFreq html pFromV html pacf2AR html pacf_to_ar html phiFromBeta_normalInverseWishart html plot.bdp_dw_result html plot.bdp_dw_tv_psd html plot.gibbs_psd html plotMPsd html print.bdp_dw_result html print.gibbs_psd html print_mcmc_state html print_summary_gibbs_psd_help html print_warn html psd_arma html psd_array html psd_dummy_model html psd_tvarma12 html psd_varma html psd_varma_help html qpsd html qpsd_dw html qpsd_dw.tilde_zigzag_cpp_expedited html realValuedPsd html rmvnorm html scree_type_ar html sim_tvarma12 html sim_varma html sldmvnorm html summary.bdp_dw_result html summary.gibbs_psd html transfer_polynomial html uci_help html uci_matrix html uniformmax html uniformmax_help html uniformmax_multi html unit_trace_I_l html unit_trace_L_from_x html unit_trace_U_from_phi html unit_trace_log_c html unit_trace_log_d html unit_trace_log_f_l html unit_trace_mu html unit_trace_nu html unit_trace_p html unit_trace_q html unit_trace_runif html unit_trace_runif_single html unit_trace_sigma2 html unit_trace_x_from_phi html unrollPsd html vFromP html varma_transfer2psd html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (beyondWhittle)