* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bbl’ ...
** package ‘bbl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’
make[1]: Entering directory '/tmp/Rtmpm05CTY/R.INSTALLf4e321b7e5086/bbl/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bfgs.cpp -o bfgs.o
bfgs.cpp: In function ‘void f12(int, const std::vector<std::vector<short int> >&, const std::vector<int>&, std::vector<double>&, std::vector<std::vector<double> >&, const std::vector<short int>&, bool, double)’:
bfgs.cpp:367:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  367 |         for(unsigned int l1=0; l1<Lj; l1++){
      |                                ~~^~~
bfgs.cpp:375:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  375 |         for(unsigned int l1=0; l1<Lj; l1++)
      |                                ~~^~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c invc.cpp -o invc.o
invc.cpp: In function ‘void invC(const std::vector<std::vector<short int> >&, const std::vector<int>&, const std::vector<short int>&, double&, double&, std::vector<std::vector<double> >&, std::vector<std::vector<std::vector<double> > >&, double, double)’:
invc.cpp:61:27: warning: ‘A’ may be used uninitialized [-Wmaybe-uninitialized]
   61 |             gsl_matrix_set(A, idx, jdx++, x);
      |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
invc.cpp:30:15: note: ‘A’ was declared here
   30 |   gsl_matrix *A;
      |               ^
invc.cpp:69:25: warning: ‘Ai’ may be used uninitialized [-Wmaybe-uninitialized]
   69 |     gsl_linalg_LU_invert(A,perm,Ai);
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
invc.cpp:31:15: note: ‘Ai’ was declared here
   31 |   gsl_matrix *Ai;
      |               ^~
invc.cpp:68:25: warning: ‘perm’ may be used uninitialized [-Wmaybe-uninitialized]
   68 |     gsl_linalg_LU_decomp(A,perm,&s);
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
invc.cpp:32:20: note: ‘perm’ was declared here
   32 |   gsl_permutation *perm;
      |                    ^~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mfwrapper.cpp -o mfwrapper.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pseudo_mle.cpp -o pseudo_mle.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bbl.so RcppExports.o bfgs.o invc.o mfwrapper.o pseudo_mle.o -lgsl -lgslcblas -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpm05CTY/R.INSTALLf4e321b7e5086/bbl/src'
make[1]: Entering directory '/tmp/Rtmpm05CTY/R.INSTALLf4e321b7e5086/bbl/src'
make[1]: Leaving directory '/tmp/Rtmpm05CTY/R.INSTALLf4e321b7e5086/bbl/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bbl/00new/bbl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘bbl’
    finding HTML links ... done
    bbl                                     html  
    bbl.fit                                 html  
    crossVal                                html  
    fitted.bbl                              html  
    formula.bbl                             html  
    freq2raw                                html  
    logLik.bbl                              html  
    mcSample                                html  
    mlestimate                              html  
    model.frame.bbl                         html  
    nobs.bbl                                html  
    plot.bbl                                html  
    plot.cv.bbl                             html  
    predict.bbl                             html  
    predict.cv.bbl                          html  
    print.bbl                               html  
    print.cv.bbl                            html  
    print.summary.bbl                       html  
    randompar                               html  
    randomsamp                              html  
    readFasta                               html  
    removeConst                             html  
    residuals.bbl                           html  
    sample_xi                               html  
    summary.bbl                             html  
    weights.bbl                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bbl)