* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘batchtools’ ...
** package ‘batchtools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpxi9gJM/R.INSTALL2c1d68464a16ca/batchtools/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c binpack.c -o binpack.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c count_not_missing.c -o count_not_missing.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fill_gaps.c -o fill_gaps.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lpt.c -o lpt.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o batchtools.so binpack.o count_not_missing.o fill_gaps.o init.o lpt.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpxi9gJM/R.INSTALL2c1d68464a16ca/batchtools/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpxi9gJM/R.INSTALL2c1d68464a16ca/batchtools/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpxi9gJM/R.INSTALL2c1d68464a16ca/batchtools/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-batchtools/00new/batchtools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘batchtools’
finding HTML links ... done
JobCollection html
JobExperiment html
JobNames html
JoinTables html
finding level-2 HTML links ... done
Tags html
Worker html
addAlgorithm html
addExperiments html
addProblem html
assertRegistry html
batchExport html
batchMap html
batchMapResults html
batchReduce html
batchtools-package html
btlapply html
cfBrewTemplate html
cfHandleUnknownSubmitError html
cfKillJob html
cfReadBrewTemplate html
chunk html
clearRegistry html
doJobCollection html
estimateRuntimes html
execJob html
findConfFile html
findJobs html
findTemplateFile html
getDefaultRegistry html
getErrorMessages html
getJobTable html
getStatus html
grepLogs html
killJobs html
loadRegistry html
loadResult html
makeClusterFunctions html
makeClusterFunctionsDocker html
makeClusterFunctionsInteractive html
makeClusterFunctionsLSF html
makeClusterFunctionsMulticore html
makeClusterFunctionsOpenLava html
makeClusterFunctionsSGE html
makeClusterFunctionsSSH html
makeClusterFunctionsSlurm html
makeClusterFunctionsSocket html
makeClusterFunctionsTORQUE html
makeExperimentRegistry html
makeRegistry html
makeSubmitJobResult html
reduceResults html
reduceResultsList html
removeExperiments html
removeRegistry html
resetJobs html
runHook html
runOSCommand html
saveRegistry html
showLog html
submitJobs html
summarizeExperiments html
sweepRegistry html
syncRegistry html
testJob html
unwrap html
waitForJobs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (batchtools)