• using R version 4.4.2 Patched (2024-12-13 r87451)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
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• this is package ‘autoMFA’ version ‘1.0.0’
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• checking whether package ‘autoMFA’ can be installed ... OK See the install log for details.
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• checking Rd files ... [1s/1s] NOTE checkRd: (-1) AMFA.Rd:37: Lost braces; missing escapes or markup?     37 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.Rd:37: Lost braces; missing escapes or markup?     37 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.Rd:37: Lost braces; missing escapes or markup?     37 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.Rd:37: Lost braces; missing escapes or markup?     37 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.Rd:37: Lost braces; missing escapes or markup?     37 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.Rd:37: Lost braces; missing escapes or markup?     37 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.Rd:45-52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:53-57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:56-57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:58-62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:30: Lost braces; missing escapes or markup?     30 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.inc.Rd:30: Lost braces; missing escapes or markup?     30 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.inc.Rd:30: Lost braces; missing escapes or markup?     30 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.inc.Rd:30: Lost braces; missing escapes or markup?     30 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.inc.Rd:30: Lost braces; missing escapes or markup?     30 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.inc.Rd:30: Lost braces; missing escapes or markup?     30 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) AMFA.inc.Rd:42-49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:50-54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:53-54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:55-58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) AMFA.inc.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:43: Lost braces; missing escapes or markup?     43 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) MFA_ECM.Rd:43: Lost braces; missing escapes or markup?     43 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) MFA_ECM.Rd:43: Lost braces; missing escapes or markup?     43 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) MFA_ECM.Rd:43: Lost braces; missing escapes or markup?     43 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) MFA_ECM.Rd:43: Lost braces; missing escapes or markup?     43 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) MFA_ECM.Rd:43: Lost braces; missing escapes or markup?     43 | \item{conv_measure}{The convergence criterion of the ECM algorithm. The default \code{'diff'} stops the ECM iterations if |l^{(k+1)} - l^{(k)}| < \code{tol} where l^{(k)} is the log-likelihood at the \emph{k}th ECM iteration. If \code{'ratio'}, then the convergence of the ECM iterations is measured using |(l^{(k+1)} - l^{(k)})/l^{(k+1)}|.}        | ^ checkRd: (-1) MFA_ECM.Rd:51-58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:59-63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:60-61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:62-63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:64-68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) MFA_ECM.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:25-32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:29-30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:33-37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:34-35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:36-37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:38-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:42-43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) amofa.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) preprocess.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) preprocess.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:27-34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:31-32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:35-39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:36-37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:38-39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:40-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) vbmfa.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
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• checking examples ... [17s/22s] OK Examples with CPU (user + system) or elapsed time > 5s          user system elapsed MFA_ECM 5.726 0.015 7.413 vbmfa 3.935 0.008 5.725
• checking PDF version of manual ... [4s/6s] OK
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• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE