* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘atom4R’ ...
** this is package ‘atom4R’ version ‘0.3-3’
** package ‘atom4R’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘atom4R’
    finding HTML links ... done
    AtomAbstractObject                      html  
Rd warning: AtomAbstractObject.Rd:8: missing link ‘R6Class’
Rd warning: AtomAbstractObject.Rd:11: missing link ‘R6Class’
Rd warning: AtomAbstractObject.Rd:103: missing link ‘XMLInternalNode-class’
Rd warning: AtomAbstractObject.Rd:295: missing link ‘XMLInternalNode-class’
Rd warning: AtomAbstractObject.Rd:340: missing link ‘XMLInternalNode-class’
Rd warning: AtomAbstractObject.Rd:386: missing link ‘R6Class’
Rd warning: AtomAbstractObject.Rd:412: missing link ‘R6Class’
    AtomAuthor                              html  
Rd warning: AtomAuthor.Rd:8: missing link ‘R6Class’
Rd warning: AtomAuthor.Rd:11: missing link ‘R6Class’
Rd warning: AtomAuthor.Rd:83: missing link ‘XMLInternalNode-class’
    AtomCategory                            html  
Rd warning: AtomCategory.Rd:92: missing link ‘XMLInternalNode-class’
    AtomContributor                         html  
Rd warning: AtomContributor.Rd:8: missing link ‘R6Class’
Rd warning: AtomContributor.Rd:11: missing link ‘R6Class’
Rd warning: AtomContributor.Rd:83: missing link ‘XMLInternalNode-class’
    AtomEntry                               html  
Rd warning: AtomEntry.Rd:8: missing link ‘R6Class’
Rd warning: AtomEntry.Rd:11: missing link ‘R6Class’
Rd warning: AtomEntry.Rd:156: missing link ‘XMLInternalNode-class’
    AtomFeed                                html  
Rd warning: AtomFeed.Rd:8: missing link ‘R6Class’
Rd warning: AtomFeed.Rd:11: missing link ‘R6Class’
Rd warning: AtomFeed.Rd:263: missing link ‘XMLInternalNode-class’
    AtomLink                                html  
Rd warning: AtomLink.Rd:8: missing link ‘R6Class’
Rd warning: AtomLink.Rd:11: missing link ‘R6Class’
Rd warning: AtomLink.Rd:95: missing link ‘XMLInternalNode-class’
    AtomNamespace                           html  
Rd warning: AtomNamespace.Rd:8: missing link ‘R6Class’
Rd warning: AtomNamespace.Rd:11: missing link ‘R6Class’
    AtomPerson                              html  
Rd warning: AtomPerson.Rd:8: missing link ‘R6Class’
Rd warning: AtomPerson.Rd:11: missing link ‘R6Class’
Rd warning: AtomPerson.Rd:91: missing link ‘XMLInternalNode-class’
    AtomPubClient                           html  
Rd warning: AtomPubClient.Rd:8: missing link ‘R6Class’
Rd warning: AtomPubClient.Rd:11: missing link ‘R6Class’
    DCAbstract                              html  
Rd warning: DCAbstract.Rd:7: missing link ‘R6Class’
Rd warning: DCAbstract.Rd:10: missing link ‘R6Class’
Rd warning: DCAbstract.Rd:72: missing link ‘XMLInternalNode-class’
    DCAccessRights                          html  
Rd warning: DCAccessRights.Rd:7: missing link ‘R6Class’
Rd warning: DCAccessRights.Rd:10: missing link ‘R6Class’
Rd warning: DCAccessRights.Rd:72: missing link ‘XMLInternalNode-class’
    DCAccrualMethod                         html  
Rd warning: DCAccrualMethod.Rd:7: missing link ‘R6Class’
Rd warning: DCAccrualMethod.Rd:10: missing link ‘R6Class’
Rd warning: DCAccrualMethod.Rd:72: missing link ‘XMLInternalNode-class’
    DCAccrualPeriodicity                    html  
Rd warning: DCAccrualPeriodicity.Rd:7: missing link ‘R6Class’
Rd warning: DCAccrualPeriodicity.Rd:10: missing link ‘R6Class’
Rd warning: DCAccrualPeriodicity.Rd:72: missing link ‘XMLInternalNode-class’
    DCAccrualPolicy                         html  
Rd warning: DCAccrualPolicy.Rd:7: missing link ‘R6Class’
Rd warning: DCAccrualPolicy.Rd:10: missing link ‘R6Class’
Rd warning: DCAccrualPolicy.Rd:72: missing link ‘XMLInternalNode-class’
    DCAlternative                           html  
Rd warning: DCAlternative.Rd:7: missing link ‘R6Class’
Rd warning: DCAlternative.Rd:10: missing link ‘R6Class’
Rd warning: DCAlternative.Rd:72: missing link ‘XMLInternalNode-class’
    DCAudience                              html  
Rd warning: DCAudience.Rd:7: missing link ‘R6Class’
Rd warning: DCAudience.Rd:10: missing link ‘R6Class’
Rd warning: DCAudience.Rd:72: missing link ‘XMLInternalNode-class’
    DCAvailable                             html  
Rd warning: DCAvailable.Rd:7: missing link ‘R6Class’
Rd warning: DCAvailable.Rd:10: missing link ‘R6Class’
Rd warning: DCAvailable.Rd:72: missing link ‘XMLInternalNode-class’
    DCBibliographicCitation                 html  
Rd warning: DCBibliographicCitation.Rd:7: missing link ‘R6Class’
Rd warning: DCBibliographicCitation.Rd:10: missing link ‘R6Class’
Rd warning: DCBibliographicCitation.Rd:72: missing link ‘XMLInternalNode-class’
    DCConformsTo                            html  
Rd warning: DCConformsTo.Rd:7: missing link ‘R6Class’
Rd warning: DCConformsTo.Rd:10: missing link ‘R6Class’
Rd warning: DCConformsTo.Rd:72: missing link ‘XMLInternalNode-class’
    DCContributor                           html  
Rd warning: DCContributor.Rd:7: missing link ‘R6Class’
Rd warning: DCContributor.Rd:10: missing link ‘R6Class’
Rd warning: DCContributor.Rd:73: missing link ‘XMLInternalNode-class’
    DCCoverage                              html  
Rd warning: DCCoverage.Rd:7: missing link ‘R6Class’
Rd warning: DCCoverage.Rd:10: missing link ‘R6Class’
Rd warning: DCCoverage.Rd:73: missing link ‘XMLInternalNode-class’
    DCCreated                               html  
Rd warning: DCCreated.Rd:7: missing link ‘R6Class’
Rd warning: DCCreated.Rd:10: missing link ‘R6Class’
Rd warning: DCCreated.Rd:72: missing link ‘XMLInternalNode-class’
    DCCreator                               html  
Rd warning: DCCreator.Rd:7: missing link ‘R6Class’
Rd warning: DCCreator.Rd:10: missing link ‘R6Class’
Rd warning: DCCreator.Rd:73: missing link ‘XMLInternalNode-class’
    DCDate                                  html  
Rd warning: DCDate.Rd:7: missing link ‘R6Class’
Rd warning: DCDate.Rd:10: missing link ‘R6Class’
Rd warning: DCDate.Rd:73: missing link ‘XMLInternalNode-class’
    DCDateAccepted                          html  
Rd warning: DCDateAccepted.Rd:7: missing link ‘R6Class’
Rd warning: DCDateAccepted.Rd:10: missing link ‘R6Class’
Rd warning: DCDateAccepted.Rd:72: missing link ‘XMLInternalNode-class’
    DCDateCopyrighted                       html  
Rd warning: DCDateCopyrighted.Rd:7: missing link ‘R6Class’
Rd warning: DCDateCopyrighted.Rd:10: missing link ‘R6Class’
Rd warning: DCDateCopyrighted.Rd:72: missing link ‘XMLInternalNode-class’
    DCDateSubmitted                         html  
Rd warning: DCDateSubmitted.Rd:7: missing link ‘R6Class’
Rd warning: DCDateSubmitted.Rd:10: missing link ‘R6Class’
Rd warning: DCDateSubmitted.Rd:72: missing link ‘XMLInternalNode-class’
    DCDescription                           html  
Rd warning: DCDescription.Rd:7: missing link ‘R6Class’
Rd warning: DCDescription.Rd:10: missing link ‘R6Class’
Rd warning: DCDescription.Rd:73: missing link ‘XMLInternalNode-class’
    DCEducationalLevel                      html  
Rd warning: DCEducationalLevel.Rd:7: missing link ‘R6Class’
Rd warning: DCEducationalLevel.Rd:10: missing link ‘R6Class’
Rd warning: DCEducationalLevel.Rd:72: missing link ‘XMLInternalNode-class’
    DCElement                               html  
Rd warning: DCElement.Rd:8: missing link ‘R6Class’
Rd warning: DCElement.Rd:11: missing link ‘R6Class’
Rd warning: DCElement.Rd:91: missing link ‘XMLInternalNode-class’
    DCEntry                                 html  
Rd warning: DCEntry.Rd:8: missing link ‘R6Class’
Rd warning: DCEntry.Rd:11: missing link ‘R6Class’
Rd warning: DCEntry.Rd:338: missing link ‘XMLInternalNode-class’
    DCExtent                                html  
Rd warning: DCExtent.Rd:7: missing link ‘R6Class’
Rd warning: DCExtent.Rd:10: missing link ‘R6Class’
Rd warning: DCExtent.Rd:72: missing link ‘XMLInternalNode-class’
    DCFormat                                html  
Rd warning: DCFormat.Rd:7: missing link ‘R6Class’
Rd warning: DCFormat.Rd:10: missing link ‘R6Class’
Rd warning: DCFormat.Rd:72: missing link ‘XMLInternalNode-class’
    DCHasPart                               html  
Rd warning: DCHasPart.Rd:7: missing link ‘R6Class’
Rd warning: DCHasPart.Rd:10: missing link ‘R6Class’
Rd warning: DCHasPart.Rd:73: missing link ‘XMLInternalNode-class’
    DCHasVersion                            html  
Rd warning: DCHasVersion.Rd:7: missing link ‘R6Class’
Rd warning: DCHasVersion.Rd:10: missing link ‘R6Class’
Rd warning: DCHasVersion.Rd:73: missing link ‘XMLInternalNode-class’
    DCIdentifier                            html  
Rd warning: DCIdentifier.Rd:7: missing link ‘R6Class’
Rd warning: DCIdentifier.Rd:10: missing link ‘R6Class’
Rd warning: DCIdentifier.Rd:73: missing link ‘XMLInternalNode-class’
    DCInstructionalMethod                   html  
Rd warning: DCInstructionalMethod.Rd:7: missing link ‘R6Class’
Rd warning: DCInstructionalMethod.Rd:10: missing link ‘R6Class’
Rd warning: DCInstructionalMethod.Rd:72: missing link ‘XMLInternalNode-class’
    DCIsPartOf                              html  
Rd warning: DCIsPartOf.Rd:7: missing link ‘R6Class’
Rd warning: DCIsPartOf.Rd:10: missing link ‘R6Class’
Rd warning: DCIsPartOf.Rd:73: missing link ‘XMLInternalNode-class’
    DCIsReferencedBy                        html  
Rd warning: DCIsReferencedBy.Rd:7: missing link ‘R6Class’
Rd warning: DCIsReferencedBy.Rd:10: missing link ‘R6Class’
Rd warning: DCIsReferencedBy.Rd:73: missing link ‘XMLInternalNode-class’
    DCIsReplacedBy                          html  
Rd warning: DCIsReplacedBy.Rd:7: missing link ‘R6Class’
Rd warning: DCIsReplacedBy.Rd:10: missing link ‘R6Class’
Rd warning: DCIsReplacedBy.Rd:73: missing link ‘XMLInternalNode-class’
    DCIsRequiredBy                          html  
Rd warning: DCIsRequiredBy.Rd:7: missing link ‘R6Class’
Rd warning: DCIsRequiredBy.Rd:10: missing link ‘R6Class’
Rd warning: DCIsRequiredBy.Rd:73: missing link ‘XMLInternalNode-class’
    DCIsVersionOf                           html  
Rd warning: DCIsVersionOf.Rd:7: missing link ‘R6Class’
Rd warning: DCIsVersionOf.Rd:10: missing link ‘R6Class’
Rd warning: DCIsVersionOf.Rd:73: missing link ‘XMLInternalNode-class’
    DCIssued                                html  
Rd warning: DCIssued.Rd:7: missing link ‘R6Class’
Rd warning: DCIssued.Rd:10: missing link ‘R6Class’
Rd warning: DCIssued.Rd:72: missing link ‘XMLInternalNode-class’
    DCLanguage                              html  
Rd warning: DCLanguage.Rd:7: missing link ‘R6Class’
Rd warning: DCLanguage.Rd:10: missing link ‘R6Class’
Rd warning: DCLanguage.Rd:73: missing link ‘XMLInternalNode-class’
    DCLicense                               html  
Rd warning: DCLicense.Rd:7: missing link ‘R6Class’
Rd warning: DCLicense.Rd:10: missing link ‘R6Class’
Rd warning: DCLicense.Rd:72: missing link ‘XMLInternalNode-class’
    DCMIVocabulary                          html  
Rd warning: DCMIVocabulary.Rd:8: missing link ‘R6Class’
Rd warning: DCMIVocabulary.Rd:11: missing link ‘R6Class’
    DCMediator                              html  
Rd warning: DCMediator.Rd:7: missing link ‘R6Class’
Rd warning: DCMediator.Rd:10: missing link ‘R6Class’
Rd warning: DCMediator.Rd:72: missing link ‘XMLInternalNode-class’
    DCMedium                                html  
Rd warning: DCMedium.Rd:7: missing link ‘R6Class’
Rd warning: DCMedium.Rd:10: missing link ‘R6Class’
Rd warning: DCMedium.Rd:72: missing link ‘XMLInternalNode-class’
    DCModified                              html  
Rd warning: DCModified.Rd:7: missing link ‘R6Class’
Rd warning: DCModified.Rd:10: missing link ‘R6Class’
Rd warning: DCModified.Rd:72: missing link ‘XMLInternalNode-class’
    DCProvenance                            html  
Rd warning: DCProvenance.Rd:7: missing link ‘R6Class’
Rd warning: DCProvenance.Rd:10: missing link ‘R6Class’
Rd warning: DCProvenance.Rd:72: missing link ‘XMLInternalNode-class’
    DCPublisher                             html  
Rd warning: DCPublisher.Rd:7: missing link ‘R6Class’
Rd warning: DCPublisher.Rd:10: missing link ‘R6Class’
Rd warning: DCPublisher.Rd:73: missing link ‘XMLInternalNode-class’
    DCReferences                            html  
Rd warning: DCReferences.Rd:7: missing link ‘R6Class’
Rd warning: DCReferences.Rd:10: missing link ‘R6Class’
Rd warning: DCReferences.Rd:72: missing link ‘XMLInternalNode-class’
    DCRelation                              html  
Rd warning: DCRelation.Rd:7: missing link ‘R6Class’
Rd warning: DCRelation.Rd:10: missing link ‘R6Class’
Rd warning: DCRelation.Rd:73: missing link ‘XMLInternalNode-class’
    DCReplaces                              html  
Rd warning: DCReplaces.Rd:7: missing link ‘R6Class’
Rd warning: DCReplaces.Rd:10: missing link ‘R6Class’
Rd warning: DCReplaces.Rd:72: missing link ‘XMLInternalNode-class’
    DCRequires                              html  
Rd warning: DCRequires.Rd:7: missing link ‘R6Class’
Rd warning: DCRequires.Rd:10: missing link ‘R6Class’
Rd warning: DCRequires.Rd:72: missing link ‘XMLInternalNode-class’
    DCRights                                html  
Rd warning: DCRights.Rd:7: missing link ‘R6Class’
Rd warning: DCRights.Rd:10: missing link ‘R6Class’
Rd warning: DCRights.Rd:73: missing link ‘XMLInternalNode-class’
    DCRightsHolder                          html  
Rd warning: DCRightsHolder.Rd:7: missing link ‘R6Class’
Rd warning: DCRightsHolder.Rd:10: missing link ‘R6Class’
Rd warning: DCRightsHolder.Rd:72: missing link ‘XMLInternalNode-class’
    DCSource                                html  
Rd warning: DCSource.Rd:7: missing link ‘R6Class’
Rd warning: DCSource.Rd:10: missing link ‘R6Class’
Rd warning: DCSource.Rd:73: missing link ‘XMLInternalNode-class’
    DCSpatial                               html  
Rd warning: DCSpatial.Rd:7: missing link ‘R6Class’
Rd warning: DCSpatial.Rd:10: missing link ‘R6Class’
Rd warning: DCSpatial.Rd:72: missing link ‘XMLInternalNode-class’
    DCSubject                               html  
Rd warning: DCSubject.Rd:7: missing link ‘R6Class’
Rd warning: DCSubject.Rd:10: missing link ‘R6Class’
Rd warning: DCSubject.Rd:73: missing link ‘XMLInternalNode-class’
    DCTableOfContents                       html  
Rd warning: DCTableOfContents.Rd:7: missing link ‘R6Class’
Rd warning: DCTableOfContents.Rd:10: missing link ‘R6Class’
Rd warning: DCTableOfContents.Rd:72: missing link ‘XMLInternalNode-class’
    DCTemporal                              html  
Rd warning: DCTemporal.Rd:7: missing link ‘R6Class’
Rd warning: DCTemporal.Rd:10: missing link ‘R6Class’
Rd warning: DCTemporal.Rd:72: missing link ‘XMLInternalNode-class’
    DCTitle                                 html  
Rd warning: DCTitle.Rd:7: missing link ‘R6Class’
Rd warning: DCTitle.Rd:10: missing link ‘R6Class’
Rd warning: DCTitle.Rd:73: missing link ‘XMLInternalNode-class’
    DCType                                  html  
Rd warning: DCType.Rd:7: missing link ‘R6Class’
Rd warning: DCType.Rd:10: missing link ‘R6Class’
Rd warning: DCType.Rd:73: missing link ‘XMLInternalNode-class’
    DCValid                                 html  
Rd warning: DCValid.Rd:7: missing link ‘R6Class’
Rd warning: DCValid.Rd:10: missing link ‘R6Class’
Rd warning: DCValid.Rd:72: missing link ‘XMLInternalNode-class’
    SwordClient                             html  
Rd warning: SwordClient.Rd:8: missing link ‘R6Class’
Rd warning: SwordClient.Rd:11: missing link ‘R6Class’
    SwordDataverseClient                    html  
Rd warning: SwordDataverseClient.Rd:8: missing link ‘R6Class’
Rd warning: SwordDataverseClient.Rd:11: missing link ‘R6Class’
    SwordHalClient                          html  
Rd warning: SwordHalClient.Rd:8: missing link ‘R6Class’
Rd warning: SwordHalClient.Rd:11: missing link ‘R6Class’
    SwordServiceDocument                    html  
Rd warning: SwordServiceDocument.Rd:8: missing link ‘R6Class’
Rd warning: SwordServiceDocument.Rd:11: missing link ‘R6Class’
Rd warning: SwordServiceDocument.Rd:72: missing link ‘XMLInternalNode-class’
    atom4R                                  html  
    atom4RLogger                            html  
Rd warning: atom4RLogger.Rd:8: missing link ‘R6Class’
Rd warning: atom4RLogger.Rd:11: missing link ‘R6Class’
Rd warning: atom4RLogger.Rd:156: missing link ‘R6Class’
    getAtomClasses                          html  
    getAtomNamespace                        html  
    getAtomNamespaces                       html  
    getAtomSchemas                          html  
    getClassesInheriting                    html  
    getDCMIVocabularies                     html  
    getDCMIVocabulary                       html  
    readDCEntry                             html  
    registerAtomNamespace                   html  
    registerAtomSchema                      html  
    setAtomNamespaces                       html  
    setAtomSchemas                          html  
    setDCMIVocabularies                     html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (atom4R)