* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘atom4R’ ... ** this is package ‘atom4R’ version ‘0.3-3’ ** package ‘atom4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘atom4R’ finding HTML links ... done AtomAbstractObject html Rd warning: AtomAbstractObject.Rd:8: missing link ‘R6Class’ Rd warning: AtomAbstractObject.Rd:11: missing link ‘R6Class’ Rd warning: AtomAbstractObject.Rd:103: missing link ‘XMLInternalNode-class’ Rd warning: AtomAbstractObject.Rd:295: missing link ‘XMLInternalNode-class’ Rd warning: AtomAbstractObject.Rd:340: missing link ‘XMLInternalNode-class’ Rd warning: AtomAbstractObject.Rd:386: missing link ‘R6Class’ Rd warning: AtomAbstractObject.Rd:412: missing link ‘R6Class’ AtomAuthor html Rd warning: AtomAuthor.Rd:8: missing link ‘R6Class’ Rd warning: AtomAuthor.Rd:11: missing link ‘R6Class’ Rd warning: AtomAuthor.Rd:83: missing link ‘XMLInternalNode-class’ AtomCategory html Rd warning: AtomCategory.Rd:92: missing link ‘XMLInternalNode-class’ AtomContributor html Rd warning: AtomContributor.Rd:8: missing link ‘R6Class’ Rd warning: AtomContributor.Rd:11: missing link ‘R6Class’ Rd warning: AtomContributor.Rd:83: missing link ‘XMLInternalNode-class’ AtomEntry html Rd warning: AtomEntry.Rd:8: missing link ‘R6Class’ Rd warning: AtomEntry.Rd:11: missing link ‘R6Class’ Rd warning: AtomEntry.Rd:156: missing link ‘XMLInternalNode-class’ AtomFeed html Rd warning: AtomFeed.Rd:8: missing link ‘R6Class’ Rd warning: AtomFeed.Rd:11: missing link ‘R6Class’ Rd warning: AtomFeed.Rd:263: missing link ‘XMLInternalNode-class’ AtomLink html Rd warning: AtomLink.Rd:8: missing link ‘R6Class’ Rd warning: AtomLink.Rd:11: missing link ‘R6Class’ Rd warning: AtomLink.Rd:95: missing link ‘XMLInternalNode-class’ AtomNamespace html Rd warning: AtomNamespace.Rd:8: missing link ‘R6Class’ Rd warning: AtomNamespace.Rd:11: missing link ‘R6Class’ AtomPerson html Rd warning: AtomPerson.Rd:8: missing link ‘R6Class’ Rd warning: AtomPerson.Rd:11: missing link ‘R6Class’ Rd warning: AtomPerson.Rd:91: missing link ‘XMLInternalNode-class’ AtomPubClient html Rd warning: AtomPubClient.Rd:8: missing link ‘R6Class’ Rd warning: AtomPubClient.Rd:11: missing link ‘R6Class’ DCAbstract html Rd warning: DCAbstract.Rd:7: missing link ‘R6Class’ Rd warning: DCAbstract.Rd:10: missing link ‘R6Class’ Rd warning: DCAbstract.Rd:72: missing link ‘XMLInternalNode-class’ DCAccessRights html Rd warning: DCAccessRights.Rd:7: missing link ‘R6Class’ Rd warning: DCAccessRights.Rd:10: missing link ‘R6Class’ Rd warning: DCAccessRights.Rd:72: missing link ‘XMLInternalNode-class’ DCAccrualMethod html Rd warning: DCAccrualMethod.Rd:7: missing link ‘R6Class’ Rd warning: DCAccrualMethod.Rd:10: missing link ‘R6Class’ Rd warning: DCAccrualMethod.Rd:72: missing link ‘XMLInternalNode-class’ DCAccrualPeriodicity html Rd warning: DCAccrualPeriodicity.Rd:7: missing link ‘R6Class’ Rd warning: DCAccrualPeriodicity.Rd:10: missing link ‘R6Class’ Rd warning: DCAccrualPeriodicity.Rd:72: missing link ‘XMLInternalNode-class’ DCAccrualPolicy html Rd warning: DCAccrualPolicy.Rd:7: missing link ‘R6Class’ Rd warning: DCAccrualPolicy.Rd:10: missing link ‘R6Class’ Rd warning: DCAccrualPolicy.Rd:72: missing link ‘XMLInternalNode-class’ DCAlternative html Rd warning: DCAlternative.Rd:7: missing link ‘R6Class’ Rd warning: DCAlternative.Rd:10: missing link ‘R6Class’ Rd warning: DCAlternative.Rd:72: missing link ‘XMLInternalNode-class’ DCAudience html Rd warning: DCAudience.Rd:7: missing link ‘R6Class’ Rd warning: DCAudience.Rd:10: missing link ‘R6Class’ Rd warning: DCAudience.Rd:72: missing link ‘XMLInternalNode-class’ DCAvailable html Rd warning: DCAvailable.Rd:7: missing link ‘R6Class’ Rd warning: DCAvailable.Rd:10: missing link ‘R6Class’ Rd warning: DCAvailable.Rd:72: missing link ‘XMLInternalNode-class’ DCBibliographicCitation html Rd warning: DCBibliographicCitation.Rd:7: missing link ‘R6Class’ Rd warning: DCBibliographicCitation.Rd:10: missing link ‘R6Class’ Rd warning: DCBibliographicCitation.Rd:72: missing link ‘XMLInternalNode-class’ DCConformsTo html Rd warning: DCConformsTo.Rd:7: missing link ‘R6Class’ Rd warning: DCConformsTo.Rd:10: missing link ‘R6Class’ Rd warning: DCConformsTo.Rd:72: missing link ‘XMLInternalNode-class’ DCContributor html Rd warning: DCContributor.Rd:7: missing link ‘R6Class’ Rd warning: DCContributor.Rd:10: missing link ‘R6Class’ Rd warning: DCContributor.Rd:73: missing link ‘XMLInternalNode-class’ DCCoverage html Rd warning: DCCoverage.Rd:7: missing link ‘R6Class’ Rd warning: DCCoverage.Rd:10: missing link ‘R6Class’ Rd warning: DCCoverage.Rd:73: missing link ‘XMLInternalNode-class’ DCCreated html Rd warning: DCCreated.Rd:7: missing link ‘R6Class’ Rd warning: DCCreated.Rd:10: missing link ‘R6Class’ Rd warning: DCCreated.Rd:72: missing link ‘XMLInternalNode-class’ DCCreator html Rd warning: DCCreator.Rd:7: missing link ‘R6Class’ Rd warning: DCCreator.Rd:10: missing link ‘R6Class’ Rd warning: DCCreator.Rd:73: missing link ‘XMLInternalNode-class’ DCDate html Rd warning: DCDate.Rd:7: missing link ‘R6Class’ Rd warning: DCDate.Rd:10: missing link ‘R6Class’ Rd warning: DCDate.Rd:73: missing link ‘XMLInternalNode-class’ DCDateAccepted html Rd warning: DCDateAccepted.Rd:7: missing link ‘R6Class’ Rd warning: DCDateAccepted.Rd:10: missing link ‘R6Class’ Rd warning: DCDateAccepted.Rd:72: missing link ‘XMLInternalNode-class’ DCDateCopyrighted html Rd warning: DCDateCopyrighted.Rd:7: missing link ‘R6Class’ Rd warning: DCDateCopyrighted.Rd:10: missing link ‘R6Class’ Rd warning: DCDateCopyrighted.Rd:72: missing link ‘XMLInternalNode-class’ DCDateSubmitted html Rd warning: DCDateSubmitted.Rd:7: missing link ‘R6Class’ Rd warning: DCDateSubmitted.Rd:10: missing link ‘R6Class’ Rd warning: DCDateSubmitted.Rd:72: missing link ‘XMLInternalNode-class’ DCDescription html Rd warning: DCDescription.Rd:7: missing link ‘R6Class’ Rd warning: DCDescription.Rd:10: missing link ‘R6Class’ Rd warning: DCDescription.Rd:73: missing link ‘XMLInternalNode-class’ DCEducationalLevel html Rd warning: DCEducationalLevel.Rd:7: missing link ‘R6Class’ Rd warning: DCEducationalLevel.Rd:10: missing link ‘R6Class’ Rd warning: DCEducationalLevel.Rd:72: missing link ‘XMLInternalNode-class’ DCElement html Rd warning: DCElement.Rd:8: missing link ‘R6Class’ Rd warning: DCElement.Rd:11: missing link ‘R6Class’ Rd warning: DCElement.Rd:91: missing link ‘XMLInternalNode-class’ DCEntry html Rd warning: DCEntry.Rd:8: missing link ‘R6Class’ Rd warning: DCEntry.Rd:11: missing link ‘R6Class’ Rd warning: DCEntry.Rd:338: missing link ‘XMLInternalNode-class’ DCExtent html Rd warning: DCExtent.Rd:7: missing link ‘R6Class’ Rd warning: DCExtent.Rd:10: missing link ‘R6Class’ Rd warning: DCExtent.Rd:72: missing link ‘XMLInternalNode-class’ DCFormat html Rd warning: DCFormat.Rd:7: missing link ‘R6Class’ Rd warning: DCFormat.Rd:10: missing link ‘R6Class’ Rd warning: DCFormat.Rd:72: missing link ‘XMLInternalNode-class’ DCHasPart html Rd warning: DCHasPart.Rd:7: missing link ‘R6Class’ Rd warning: DCHasPart.Rd:10: missing link ‘R6Class’ Rd warning: DCHasPart.Rd:73: missing link ‘XMLInternalNode-class’ DCHasVersion html Rd warning: DCHasVersion.Rd:7: missing link ‘R6Class’ Rd warning: DCHasVersion.Rd:10: missing link ‘R6Class’ Rd warning: DCHasVersion.Rd:73: missing link ‘XMLInternalNode-class’ DCIdentifier html Rd warning: DCIdentifier.Rd:7: missing link ‘R6Class’ Rd warning: DCIdentifier.Rd:10: missing link ‘R6Class’ Rd warning: DCIdentifier.Rd:73: missing link ‘XMLInternalNode-class’ DCInstructionalMethod html Rd warning: DCInstructionalMethod.Rd:7: missing link ‘R6Class’ Rd warning: DCInstructionalMethod.Rd:10: missing link ‘R6Class’ Rd warning: DCInstructionalMethod.Rd:72: missing link ‘XMLInternalNode-class’ DCIsPartOf html Rd warning: DCIsPartOf.Rd:7: missing link ‘R6Class’ Rd warning: DCIsPartOf.Rd:10: missing link ‘R6Class’ Rd warning: DCIsPartOf.Rd:73: missing link ‘XMLInternalNode-class’ DCIsReferencedBy html Rd warning: DCIsReferencedBy.Rd:7: missing link ‘R6Class’ Rd warning: DCIsReferencedBy.Rd:10: missing link ‘R6Class’ Rd warning: DCIsReferencedBy.Rd:73: missing link ‘XMLInternalNode-class’ DCIsReplacedBy html Rd warning: DCIsReplacedBy.Rd:7: missing link ‘R6Class’ Rd warning: DCIsReplacedBy.Rd:10: missing link ‘R6Class’ Rd warning: DCIsReplacedBy.Rd:73: missing link ‘XMLInternalNode-class’ DCIsRequiredBy html Rd warning: DCIsRequiredBy.Rd:7: missing link ‘R6Class’ Rd warning: DCIsRequiredBy.Rd:10: missing link ‘R6Class’ Rd warning: DCIsRequiredBy.Rd:73: missing link ‘XMLInternalNode-class’ DCIsVersionOf html Rd warning: DCIsVersionOf.Rd:7: missing link ‘R6Class’ Rd warning: DCIsVersionOf.Rd:10: missing link ‘R6Class’ Rd warning: DCIsVersionOf.Rd:73: missing link ‘XMLInternalNode-class’ DCIssued html Rd warning: DCIssued.Rd:7: missing link ‘R6Class’ Rd warning: DCIssued.Rd:10: missing link ‘R6Class’ Rd warning: DCIssued.Rd:72: missing link ‘XMLInternalNode-class’ DCLanguage html Rd warning: DCLanguage.Rd:7: missing link ‘R6Class’ Rd warning: DCLanguage.Rd:10: missing link ‘R6Class’ Rd warning: DCLanguage.Rd:73: missing link ‘XMLInternalNode-class’ DCLicense html Rd warning: DCLicense.Rd:7: missing link ‘R6Class’ Rd warning: DCLicense.Rd:10: missing link ‘R6Class’ Rd warning: DCLicense.Rd:72: missing link ‘XMLInternalNode-class’ DCMIVocabulary html Rd warning: DCMIVocabulary.Rd:8: missing link ‘R6Class’ Rd warning: DCMIVocabulary.Rd:11: missing link ‘R6Class’ DCMediator html Rd warning: DCMediator.Rd:7: missing link ‘R6Class’ Rd warning: DCMediator.Rd:10: missing link ‘R6Class’ Rd warning: DCMediator.Rd:72: missing link ‘XMLInternalNode-class’ DCMedium html Rd warning: DCMedium.Rd:7: missing link ‘R6Class’ Rd warning: DCMedium.Rd:10: missing link ‘R6Class’ Rd warning: DCMedium.Rd:72: missing link ‘XMLInternalNode-class’ DCModified html Rd warning: DCModified.Rd:7: missing link ‘R6Class’ Rd warning: DCModified.Rd:10: missing link ‘R6Class’ Rd warning: DCModified.Rd:72: missing link ‘XMLInternalNode-class’ DCProvenance html Rd warning: DCProvenance.Rd:7: missing link ‘R6Class’ Rd warning: DCProvenance.Rd:10: missing link ‘R6Class’ Rd warning: DCProvenance.Rd:72: missing link ‘XMLInternalNode-class’ DCPublisher html Rd warning: DCPublisher.Rd:7: missing link ‘R6Class’ Rd warning: DCPublisher.Rd:10: missing link ‘R6Class’ Rd warning: DCPublisher.Rd:73: missing link ‘XMLInternalNode-class’ DCReferences html Rd warning: DCReferences.Rd:7: missing link ‘R6Class’ Rd warning: DCReferences.Rd:10: missing link ‘R6Class’ Rd warning: DCReferences.Rd:72: missing link ‘XMLInternalNode-class’ DCRelation html Rd warning: DCRelation.Rd:7: missing link ‘R6Class’ Rd warning: DCRelation.Rd:10: missing link ‘R6Class’ Rd warning: DCRelation.Rd:73: missing link ‘XMLInternalNode-class’ DCReplaces html Rd warning: DCReplaces.Rd:7: missing link ‘R6Class’ Rd warning: DCReplaces.Rd:10: missing link ‘R6Class’ Rd warning: DCReplaces.Rd:72: missing link ‘XMLInternalNode-class’ DCRequires html Rd warning: DCRequires.Rd:7: missing link ‘R6Class’ Rd warning: DCRequires.Rd:10: missing link ‘R6Class’ Rd warning: DCRequires.Rd:72: missing link ‘XMLInternalNode-class’ DCRights html Rd warning: DCRights.Rd:7: missing link ‘R6Class’ Rd warning: DCRights.Rd:10: missing link ‘R6Class’ Rd warning: DCRights.Rd:73: missing link ‘XMLInternalNode-class’ DCRightsHolder html Rd warning: DCRightsHolder.Rd:7: missing link ‘R6Class’ Rd warning: DCRightsHolder.Rd:10: missing link ‘R6Class’ Rd warning: DCRightsHolder.Rd:72: missing link ‘XMLInternalNode-class’ DCSource html Rd warning: DCSource.Rd:7: missing link ‘R6Class’ Rd warning: DCSource.Rd:10: missing link ‘R6Class’ Rd warning: DCSource.Rd:73: missing link ‘XMLInternalNode-class’ DCSpatial html Rd warning: DCSpatial.Rd:7: missing link ‘R6Class’ Rd warning: DCSpatial.Rd:10: missing link ‘R6Class’ Rd warning: DCSpatial.Rd:72: missing link ‘XMLInternalNode-class’ DCSubject html Rd warning: DCSubject.Rd:7: missing link ‘R6Class’ Rd warning: DCSubject.Rd:10: missing link ‘R6Class’ Rd warning: DCSubject.Rd:73: missing link ‘XMLInternalNode-class’ DCTableOfContents html Rd warning: DCTableOfContents.Rd:7: missing link ‘R6Class’ Rd warning: DCTableOfContents.Rd:10: missing link ‘R6Class’ Rd warning: DCTableOfContents.Rd:72: missing link ‘XMLInternalNode-class’ DCTemporal html Rd warning: DCTemporal.Rd:7: missing link ‘R6Class’ Rd warning: DCTemporal.Rd:10: missing link ‘R6Class’ Rd warning: DCTemporal.Rd:72: missing link ‘XMLInternalNode-class’ DCTitle html Rd warning: DCTitle.Rd:7: missing link ‘R6Class’ Rd warning: DCTitle.Rd:10: missing link ‘R6Class’ Rd warning: DCTitle.Rd:73: missing link ‘XMLInternalNode-class’ DCType html Rd warning: DCType.Rd:7: missing link ‘R6Class’ Rd warning: DCType.Rd:10: missing link ‘R6Class’ Rd warning: DCType.Rd:73: missing link ‘XMLInternalNode-class’ DCValid html Rd warning: DCValid.Rd:7: missing link ‘R6Class’ Rd warning: DCValid.Rd:10: missing link ‘R6Class’ Rd warning: DCValid.Rd:72: missing link ‘XMLInternalNode-class’ SwordClient html Rd warning: SwordClient.Rd:8: missing link ‘R6Class’ Rd warning: SwordClient.Rd:11: missing link ‘R6Class’ SwordDataverseClient html Rd warning: SwordDataverseClient.Rd:8: missing link ‘R6Class’ Rd warning: SwordDataverseClient.Rd:11: missing link ‘R6Class’ SwordHalClient html Rd warning: SwordHalClient.Rd:8: missing link ‘R6Class’ Rd warning: SwordHalClient.Rd:11: missing link ‘R6Class’ SwordServiceDocument html Rd warning: SwordServiceDocument.Rd:8: missing link ‘R6Class’ Rd warning: SwordServiceDocument.Rd:11: missing link ‘R6Class’ Rd warning: SwordServiceDocument.Rd:72: missing link ‘XMLInternalNode-class’ atom4R html atom4RLogger html Rd warning: atom4RLogger.Rd:8: missing link ‘R6Class’ Rd warning: atom4RLogger.Rd:11: missing link ‘R6Class’ Rd warning: atom4RLogger.Rd:156: missing link ‘R6Class’ getAtomClasses html getAtomNamespace html getAtomNamespaces html getAtomSchemas html getClassesInheriting html getDCMIVocabularies html getDCMIVocabulary html readDCEntry html registerAtomNamespace html registerAtomSchema html setAtomNamespaces html setAtomSchemas html setDCMIVocabularies html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (atom4R)