* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘apex’ ...
** this is package ‘apex’ version ‘1.0.6’
** package ‘apex’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘apex’
finding HTML links ... done
accessors html
add.gaps html
apex-package html
concatenate html
dist.multidna html
getTree html
initialize-multidna-method html
initialize-multiphyDat-method html
multidna html
multidna2alignment html
Rd warning: multidna2alignment.Rd:38: missing link ‘as.alignment’
multidna2genind html
Rd warning: multidna2genind.Rd:26: missing link ‘genind-class’
Rd warning: multidna2genind.Rd:23: missing link ‘genind-class’
Rd warning: multidna2genind.Rd:46: missing link ‘DNAbin2genind’
multidna2multiphyDat html
Rd warning: multidna2multiphyDat.Rd:38: missing link ‘DNAbin2genind’
multiphyDat html
plot-multidna-method html
Rd warning: plot-multidna-method.Rd:20: missing link ‘image.DNAbin’
readfiles html
rm.gaps html
show-multidna-method html
show-multiphyDat-method html
subset.multidna html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (apex)