* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘alphabetr’ ...
** package ‘alphabetr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0E2vvl/R.INSTALL68c2e2217aae7/alphabetr/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dual_discrim_dual_likelihood.cpp -o dual_discrim_dual_likelihood.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dual_discrim_shared_likelihood.cpp -o dual_discrim_shared_likelihood.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c likelihood_dual.cpp -o likelihood_dual.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c likelihood_dualdual.cpp -o likelihood_dualdual.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c likelihood_single.cpp -o likelihood_single.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o alphabetr.so RcppExports.o dual_discrim_dual_likelihood.o dual_discrim_shared_likelihood.o likelihood_dual.o likelihood_dualdual.o likelihood_single.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0E2vvl/R.INSTALL68c2e2217aae7/alphabetr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0E2vvl/R.INSTALL68c2e2217aae7/alphabetr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0E2vvl/R.INSTALL68c2e2217aae7/alphabetr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-alphabetr/00new/alphabetr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘alphabetr’
    finding HTML links ... done
    bagpipe                                 html  
    chain_scores                            html  
    combine_freq_results                    html  
    create_clones                           html  
    create_data                             html  
    create_data_singlecells                 html  
    dual_discrim_dual_likelihood            html  
    dual_discrim_shared_likelihood          html  
    dual_eval                               html  
    dual_tail                               html  
    dual_top                                html  
    freq_estimate                           html  
    freq_eval                               html  
    likelihood_dual                         html  
    likelihood_dualdual                     html  
    likelihood_single                       html  
    read_alphabetr                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (alphabetr)