* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘alcyon’ ... ** package ‘alcyon’ successfully unpacked and MD5 sums checked ** using staged installation R_HOME set at: /home/hornik/tmp/R.check/r-patched-gcc/Work/build configure: creating ./config.status config.status: creating src/Makevars R has been built with OpenMP support, enabling -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-14 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-14 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp 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CMakeFiles/salalib.dir/agents/agentanalysis.cpp.o /usr/bin/ranlib libsalalib.a make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpoctXSU/R.INSTALL105fda60885b23/alcyon/src/build-Release' [100%] Built target salalib make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpoctXSU/R.INSTALL105fda60885b23/alcyon/src/build-Release' /usr/bin/cmake -E cmake_progress_start /home/hornik/tmp/scratch/RtmpoctXSU/R.INSTALL105fda60885b23/alcyon/src/build-Release/CMakeFiles 0 make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoctXSU/R.INSTALL105fda60885b23/alcyon/src/build-Release' ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoctXSU/R.INSTALL105fda60885b23/alcyon/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c main.cpp -o build-Release/main.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c communicator.cpp -o build-Release/communicator.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c rcpp_ShapeMap.cpp -o build-Release/rcpp_ShapeMap.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c rcpp_ShapeGraph.cpp -o build-Release/rcpp_ShapeGraph.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c rcpp_AllLineMap.cpp -o build-Release/rcpp_AllLineMap.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c rcpp_PointMap.cpp -o build-Release/rcpp_PointMap.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c rcpp_metagraphdata.cpp -o build-Release/rcpp_metagraphdata.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c process_convertInternal.cpp -o build-Release/process_convertInternal.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c process_convertExternal.cpp -o build-Release/process_convertExternal.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c process_link.cpp -o build-Release/process_link.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c process_isovist.cpp -o build-Release/process_isovist.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_axial.cpp -o build-Release/analysis_axial.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_segment.cpp -o build-Release/analysis_segment.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_segmentDepth.cpp -o build-Release/analysis_segmentDepth.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_segmentShortestPath.cpp -o build-Release/analysis_segmentShortestPath.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_allFewest.cpp -o build-Release/analysis_allFewest.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_vgaGlobal.cpp -o build-Release/analysis_vgaGlobal.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_vgaLocal.cpp -o build-Release/analysis_vgaLocal.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_vgaIsovist.cpp -o build-Release/analysis_vgaIsovist.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_vgaDepth.cpp -o build-Release/analysis_vgaDepth.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_vgaShortestPath.cpp -o build-Release/analysis_vgaShortestPath.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c analysis_agent.cpp -o build-Release/analysis_agent.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src/libs -I../../inst/include/ -I.. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -c RcppExports.cpp -o build-Release/RcppExports.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o alcyon.so build-Release/main.o build-Release/communicator.o build-Release/rcpp_ShapeMap.o build-Release/rcpp_ShapeGraph.o build-Release/rcpp_AllLineMap.o build-Release/rcpp_PointMap.o build-Release/rcpp_metagraphdata.o build-Release/process_convertInternal.o build-Release/process_convertExternal.o build-Release/process_link.o build-Release/process_isovist.o build-Release/analysis_axial.o build-Release/analysis_segment.o build-Release/analysis_segmentDepth.o build-Release/analysis_segmentShortestPath.o build-Release/analysis_allFewest.o build-Release/analysis_vgaGlobal.o build-Release/analysis_vgaLocal.o build-Release/analysis_vgaIsovist.o build-Release/analysis_vgaDepth.o build-Release/analysis_vgaShortestPath.o build-Release/analysis_agent.o build-Release/RcppExports.o -fopenmp build-Release/libalcyon_gensala.a -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoctXSU/R.INSTALL105fda60885b23/alcyon/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoctXSU/R.INSTALL105fda60885b23/alcyon/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoctXSU/R.INSTALL105fda60885b23/alcyon/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-alcyon/00new/alcyon/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘alcyon’ finding HTML links ... done AgentLookMode html AllLineShapeGraph-class html AxialShapeGraph-class html AxialShapeGraph_subset html PointMap-class html PointMap_subset html SegmentShapeGraph-class html SegmentShapeGraph_subset html ShapeMap-class html ShapeMap_subset html TraversalType html VGALocalAlgorithm html agentAnalysis html allToAllTraverse html as html axialAnalysisLocal html axialToSegmentShapeGraph html blockLines html connections-AxialShapeGraph-method html connections-PointMap-method html connections-SegmentShapeGraph-method html connections html createGrid html fillGrid html getTopFeatures html isovist html isovist2pts html linkCoords-AxialShapeGraph-method html linkCoords-PointMap-method html linkCoords html linkRefs-AxialShapeGraph-method html linkRefs-PointMap-method html linkRefs html links-AxialShapeGraph-method html links-PointMap-method html links html makeAllLineMap html makeColour html makeVGAGraph html makeVGAPointMap html matchPointsToLines html name-PointMap-method html name-ShapeMap-method html name html oneToAllTraverse html oneToOneTraverse html palettes html plot.PointMap html readMetaGraph html reduceToFewest html refIdToIndexAndBack html shapeMapToPolygonSf html shapegraphToGraphData html unlinkAtCrossPoint-AxialShapeGraph-method html unlinkAtCrossPoint html unlinkCoords-AxialShapeGraph-method html unlinkCoords-PointMap-method html unlinkCoords html unlinkRefs-AxialShapeGraph-method html unlinkRefs-PointMap-method html unlinkRefs html unmakeVGAGraph html vgaIsovist html vgaThroughVision html vgaVisualLocal html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alcyon)