* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘agvgd’ ...
** package ‘agvgd’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘agvgd’
    finding HTML links ... done
    agvgd-package                           html  
    agvgd                                   html  
    alignment_file                          html  
    amino_acids                             html  
    cpv_ranges                              html  
    dev                                     html  
    gd                                      html  
    gv                                      html  
    pipe                                    html  
    poi_to_res                              html  
    profile_to_alignment                    html  
    read_agvgdweb_results                   html  
    read_alignment                          html  
    read_substitutions                      html  
    res_to_poi                              html  
    str_chop                                html  
    write_alignment                         html  
    write_substitutions                     html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (agvgd)