* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ade4’ ...
** this is package ‘ade4’ version ‘1.7-23’
** package ‘ade4’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-8) 14.3.0’
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVBMaWW/R.INSTALL2e288ce1df77b/ade4/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ade4libCpp.cpp -o ade4libCpp.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c adesub.c -o adesub.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c divsub.c -o divsub.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fourthcorner.c -o fourthcorner.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phylog.c -o phylog.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testamova.c -o testamova.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testdim.c -o testdim.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testrlq.c -o testrlq.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tests.c -o tests.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c testsCpp.cpp -o testsCpp.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ade4.so RcppExports.o ade4libCpp.o adesub.o divsub.o fourthcorner.o init.o phylog.o testamova.o testdim.o testrlq.o tests.o testsCpp.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVBMaWW/R.INSTALL2e288ce1df77b/ade4/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVBMaWW/R.INSTALL2e288ce1df77b/ade4/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVBMaWW/R.INSTALL2e288ce1df77b/ade4/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ade4/00new/ade4/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘ade4’
finding HTML links ... done
PI2newick html
RV.randtest html
RV.rtest html
RVdist.randtest html
RVintra.randtest html
abouheif.eg html
acacia html
add.scatter html
ade4-deprecated html
ade4-internal html
ade4.package html
adegraphicsLoaded html
aminoacyl html
amova html
apis108 html
apqe html
aravo html
ardeche html
area.plot html
arrival html
as.taxo html
atlas html
atya html
avijons html
avimedi html
aviurba html
bacteria html
banque html
baran95 html
bca html
bca.coinertia html
bca.rlq html
bf88 html
bicenter.wt html
bordeaux html
bsetal97 html
buech html
butterfly html
bwca.dpcoa html
cailliez html
capitales html
carni19 html
carni70 html
carniherbi49 html
casitas html
chatcat html
chats html
chazeb html
chevaine html
chickenk html
clementines html
cnc2003 html
coinertia html
coleo html
combine.4thcorner html
corkdist html
corvus html
costatis html
costatis.randtest html
dagnelie.test html
deug html
disc html
discrimin html
discrimin.coa html
dist.binary html
dist.dudi html
dist.ktab html
dist.neig html
dist.prop html
dist.quant html
divc html
divcmax html
dotchart.phylog html
dotcircle html
doubs html
dpcoa html
dudi html
dudi.acm html
dudi.coa html
dudi.dec html
dudi.fca html
dudi.hillsmith html
dudi.mix html
dudi.nsc html
dudi.pca html
dudi.pco html
dunedata html
ecg html
ecomor html
elec88 html
escopage html
euro123 html
fission html
foucart html
fourthcorner html
friday87 html
fruits html
gearymoran html
ggtortoises html
granulo html
gridrowcol html
hdpg html
houmousr html
housetasks html
humDNAm html
ichtyo html
inertia.dudi html
irishdata html
is.euclid html
julliot html
jv73 html
kcponds html
kdist html
kdist2ktab html
kdisteuclid html
kplot html
kplot.foucart html
kplot.mcoa html
kplot.mfa html
kplot.pta html
kplot.sepan html
kplot.statis html
krandtest html
ktab html
ktab.data.frame html
ktab.list.df html
ktab.list.dudi html
ktab.match2ktabs html
ktab.within html
lascaux html
lingoes html
lizards html
loocv.bca html
loocv.discrimin html
loocv.dudi html
macaca html
macon html
macroloire html
mafragh html
mantel.randtest html
mantel.rtest html
maples html
mariages html
mbpcaiv html
mbpls html
mcoa html
mdpcoa html
meau html
meaudret html
mfa html
microsatt html
mjrochet html
mld html
mollusc html
monde84 html
morphosport html
mstree html
multiblock html
neig html
newick.eg html
newick2phylog html
niche html
nipals html
njplot html
olympic html
oribatid html
originality html
orthobasis html
ours html
palm html
pap html
pcaiv html
pcaivortho html
pcoscaled html
pcw html
perthi02 html
phylog html
piosphere html
plot.between html
plot.phylog html
plot.within html
presid2002 html
procella html
procuste html
procuste.randtest html
procuste.rtest html
pta html
quasieuclid html
randboot html
randboot.multiblock html
randtest html
randtest.amova html
randtest.between html
randtest.coinertia html
randtest.discrimin html
randtest.dpcoa html
randtest.pcaiv html
randxval html
rankrock html
reconst html
rhizobium html
rhone html
rlq html
rpjdl html
rtest html
rtest.between html
rtest.discrimin html
s.arrow html
s.chull html
s.class html
s.corcircle html
s.distri html
s.hist html
s.image html
s.kde2d html
s.label html
s.logo html
s.match html
s.match.class html
s.multinom html
s.traject html
s.value html
santacatalina html
sarcelles html
scalewt html
scatter html
scatter.acm html
scatter.coa html
scatter.dudi html
scatter.fca html
scatterutil html
sco.boxplot html
sco.class html
sco.distri html
sco.gauss html
sco.label html
sco.match html
sco.quant html
score html
score.acm html
score.coa html
score.mix html
score.pca html
seconde html
sepan html
skulls html
statico html
statico.krandtest html
statis html
steppe html
supcol html
supdist html
suprow html
suprow.pta html
symbols.phylog html
syndicats html
t3012 html
table.cont html
table.dist html
table.paint html
table.phylog html
table.value html
tarentaise html
taxo.eg html
testdim html
testdim.multiblock html
tintoodiel html
tithonia html
tortues html
toxicity html
triangle.class html
triangle.plot html
trichometeo html
ungulates html
uniquewt.df html
variance.phylog html
varipart html
vegtf html
veuvage html
wca html
wca.coinertia html
wca.rlq html
westafrica html
withinpca html
witwit.coa html
woangers html
worksurv html
yanomama html
zealand html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ade4)