* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘VGAM’ ...
** package ‘VGAM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY3WNpo/R.INSTALL17524a5c2562df/VGAM/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c VGAM_init.c -o VGAM_init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c caqo3.c -o caqo3.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c ei.f -o ei.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c fgam.f -o fgam.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gautr.c -o gautr.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lerchphi.c -o lerchphi.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c lms.f -o lms.o
lms.f:157:5:
157 | 23031 continue
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| 1
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gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c muxr3.c -o muxr3.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c rgam.f -o rgam.o
rgam.f:185:5:
185 | 23014 continue
| 1
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65 | 23010 continue
| 1
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rgam.f:61:5:
61 | 23008 continue
| 1
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rgam.f:49:5:
49 | 23001 ayfnwr1v = ayfnwr1v+1
| 1
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rgam.f:300:5:
300 | 23080 continue
| 1
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290 | 23074 continue
| 1
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274 | 23066 continue
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252 | 23056 continue
| 1
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224 | 23052 continue
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219 | 23050 continue
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306 | 23048 continue
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211 | 23046 continue
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511 | 23128 continue
| 1
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501 | 23120 continue
| 1
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470 | 23116 continue
| 1
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459 | 23112 continue
| 1
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449 | 23108 continue
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444 | 23106 continue
| 1
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rgam.f:439:5:
439 | 23104 continue
| 1
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rgam.f:402:5:
402 | 23101 gp1jxzuh = gp1jxzuh-1
| 1
Warning: Label 23101 at (1) defined but not used [-Wunused-label]
rgam.f:406:5:
406 | 23099 continue
| 1
Warning: Label 23099 at (1) defined but not used [-Wunused-label]
rgam.f:386:5:
386 | 23096 gp1jxzuh = gp1jxzuh+1
| 1
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rgam.f:390:5:
390 | 23094 continue
| 1
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375 | 23082 continue
| 1
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gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rgam3.c -o rgam3.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c specfun3.c -o specfun3.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c tyeepolygamma.f -o tyeepolygamma.o
tyeepolygamma.f:112:5:
112 | 23017 continue
| 1
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gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tyeepolygamma3.c -o tyeepolygamma3.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c vdigami.f -o vdigami.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c veigen.f -o veigen.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c vgam.f -o vgam.o
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16 | 23003 continue
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18 | 23001 continue
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59 | 23019 continue
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61 | 23017 continue
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50 | 23015 continue
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52 | 23013 continue
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41 | 23011 continue
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43 | 23009 continue
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32 | 23007 continue
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34 | 23005 continue
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93 | 23021 continue
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266 | 23077 continue
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230 | 23071 continue
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314 | 23085 continue
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vgam.f:746:5:
746 | 23266 gp1jxzuh=gp1jxzuh+1
| 1
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vgam.f:737:5:
737 | 23263 gp1jxzuh=gp1jxzuh+1
| 1
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vgam.f:740:5:
740 | 23260 kij0gwer=kij0gwer-1
| 1
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vgam.f:724:5:
724 | 23253 lsvdbx3tk=lsvdbx3tk+1
| 1
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vgam.f:712:5:
712 | 23250 gp1jxzuh=gp1jxzuh+1
| 1
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vgam.f:704:5:
704 | 23247 gp1jxzuh=gp1jxzuh+1
| 1
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vgam.f:715:5:
715 | 23244 lsvdbx3tk=lsvdbx3tk+1
| 1
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vgam.f:751:5:
751 | 23239 ayfnwr1v = ayfnwr1v-1
| 1
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685 | 23237 continue
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gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vgam3.c -o vgam3.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c vlinpack1.f -o vlinpack1.o
vlinpack1.f:70:5:
70 | 23016 j=j+1
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vlinpack1.f:35:5:
35 | 23007 j=j+1
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17 | 23001 continue
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gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c vlinpack2.f -o vlinpack2.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c vlinpack3.f -o vlinpack3.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c vmux.f -o vmux.o
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14 | 23001 urohxe6t=urohxe6t-1
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61 | 23022 gp1jxzuh=gp1jxzuh+1
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64 | 23019 yq6lorbx=yq6lorbx+1
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67 | 23016 ayfnwr1v=ayfnwr1v+1
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106 | 23037 bpvaqm5z=bpvaqm5z+1
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110 | 23034 yq6lorbx=yq6lorbx+1
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113 | 23031 ayfnwr1v=ayfnwr1v+1
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139 | 23046 gp1jxzuh=gp1jxzuh+1
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143 | 23043 yq6lorbx=yq6lorbx-1
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146 | 23040 ayfnwr1v=ayfnwr1v+1
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vmux.f:210:5:
210 | 23072 gp1jxzuh=gp1jxzuh+1
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214 | 23069 yq6lorbx=yq6lorbx-1
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234 | 23075 continue
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vmux.f:326:5:
326 | 23120 gp1jxzuh=gp1jxzuh+1
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vmux.f:331:5:
331 | 23115 col=col+1
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334 | 23112 yq6lorbx=yq6lorbx+1
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299 | 23107 gp1jxzuh=gp1jxzuh+1
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307 | 23102 yq6lorbx=yq6lorbx-1
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310 | 23099 col=col+1
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vmux.f:280:5:
280 | 23096 col=col+1
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vmux.f:283:5:
283 | 23093 yq6lorbx=yq6lorbx+1
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vmux.f:359:5:
359 | 23123 yq6lorbx=yq6lorbx+1
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vmux.f:435:5:
435 | 23144 continue
| 1
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vmux.f:438:5:
438 | 23131 ayfnwr1v=ayfnwr1v+1
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vmux.f:441:5:
441 | 23128 kij0gwer=kij0gwer+1
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539 | 23166 continue
| 1
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542 | 23151 ayfnwr1v=ayfnwr1v+1
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vmux.f:545:5:
545 | 23148 kij0gwer=kij0gwer+1
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vmux.f:616:5:
616 | 23174 continue
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gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vmux3.c -o vmux3.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zeta3.c -o zeta3.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o VGAM.so VGAM_init.o caqo3.o ei.o fgam.o gautr.o lerchphi.o lms.o muxr3.o rgam.o rgam3.o specfun3.o tyeepolygamma.o tyeepolygamma3.o vdigami.o veigen.o vgam.o vgam3.o vlinpack1.o vlinpack2.o vlinpack3.o vmux.o vmux3.o zeta3.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY3WNpo/R.INSTALL17524a5c2562df/VGAM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY3WNpo/R.INSTALL17524a5c2562df/VGAM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY3WNpo/R.INSTALL17524a5c2562df/VGAM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-VGAM/00new/VGAM/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘VGAM’
finding HTML links ... done
A1A2A3 html
AA.Aa.aa html
AB.Ab.aB.ab html
ABO html
AICvlm html
AR1 html
AR1EIM html
AR1UC html
BICvlm html
CM.equid html
Coef html
Coef.qrrvglm-class html
Coef.qrrvglm html
Coef.rrvglm-class html
Coef.rrvglm html
Coef.vlm html
CommonVGAMffArguments html
Huggins89.t1 html
Influence html
Inv.gaussian html
KLDvglm html
Links html
MNSs html
Max html
N1binomUC html
N1binomial html
N1poisUC html
N1poisson html
Opt html
ParetoUC html
QvarUC html
R2latvar html
Rank html
Rcim html
SURff html
Select html
SurvS4-class html
SurvS4 html
TICvlm html
Tol html
Trunc html
UtilitiesVGAM html
V1 html
V2 html
VGAM-package html
acat html
alogitlink html
alteredvglm html
amlbinomial html
amlexponential html
amlnormal html
amlpoisson html
anovavglm html
asinlink html
auuc html
auxposbernoulli.t html
backPain html
beggs html
bell html
benfUC html
benini html
beniniUC html
betaII html
betaR html
betabinomUC html
betabinomial html
betabinomialff html
betaff html
betageomUC html
betageometric html
betanormUC html
betaprime html
biamhcop html
biamhcopUC html
biclaytoncop html
biclaytoncopUC html
bifgmcop html
bifgmcopUC html
bifgmexp html
bifrankcop html
bifrankcopUC html
bigumbelIexp html
bilogisUC html
bilogistic html
binom2.or html
binom2.orUC html
binom2.rho html
binom2.rhoUC html
binomialff html
binormal html
binormalUC html
binormalcop html
binormcopUC html
biplackettcop html
biplackettcopUC html
biplot-methods html
bisa html
bisaUC html
bistudentt html
bistudenttUC html
bmi.nz html
borel.tanner html
bortUC html
brat html
bratUC html
bratt html
budworm html
calibrate-methods html
calibrate html
calibrate.qrrvglm html
calibrate.qrrvglm.control html
calibrate.rrvglm html
calibrate.rrvglm.control html
cao html
cao.control html
cardUC html
cardioid html
cauchitlink html
cauchy html
cdf.lmscreg html
cens.gumbel html
cens.normal html
cens.poisson html
cfibrosis html
cgo html
chest.nz html
chinese.nz html
chisq html
clo html
clogloglink html
coalminers html
coefvgam html
coefvlm html
concoef-methods html
concoef html
confintvglm html
constraints html
cops html
corbet html
cqo html
crashes html
cratio html
cumulative html
dagum html
dagumUC html
deermice html
deplot.lmscreg html
depvar html
df.residual html
dgaitdplot html
diffzeta html
diffzetaUC html
dirichlet html
dirmul.old html
dirmultinomial html
double.cens.normal html
double.expbinomial html
drop1 html
ducklings html
eCDF html
eexpUC html
enormUC html
enzyme html
erf html
erlang html
eunifUC html
expexpff html
expexpff1 html
expgeometric html
expgeometricUC html
expint3 html
explink html
explogUC html
explogff html
exponential html
exppoisson html
exppoissonUC html
extbetabinomUC html
extbetabinomial html
extlogF.UC html
extlogF1 html
familyname html
felix html
felixUC html
fff html
fill1 html
finney44 html
fisherzlink html
fisk html
fiskUC html
fittedvlm html
fix.crossing html
flourbeetle html
foldnormUC html
foldnormal html
foldsqrtlink html
formulavlm html
frechet html
frechetUC html
freund61 html
gaitdbinomUC html
gaitdlog html
gaitdlogUC html
gaitdnbinomUC html
gaitdnbinomial html
gaitdpoisUC html
gaitdpoisson html
gaitdzeta html
gaitdzetaUC html
gamma1 html
gamma2 html
gammaR html
gammaff.mm html
gammahyperbola html
garma html
genbetaII html
genbetaIIUC html
gengamma html
gengammaUC html
genpois0UC html
genpois1UC html
genpoisson0 html
genpoisson1 html
genpoisson2 html
genrayleigh html
genrayleighUC html
gensh html
genshUC html
geometric html
get.smart html
get.smart.prediction html
gev html
gevUC html
gew html
goffset html
gompertz html
gompertzUC html
gpd html
gpdUC html
grain.us html
grc html
gumbel html
gumbelII html
gumbelIIUC html
gumbelUC html
guplot html
has.intercept html
hatvalues html
hdeff html
hdeffsev html
hormone html
hspider html
huber html
huberUC html
hunua html
hurea html
hureaUC html
hyperg html
hypersecant html
hzeta html
hzetaUC html
iam html
identitylink html
inv.binomial html
inv.gaussianff html
inv.lomax html
inv.lomaxUC html
inv.paralogistic html
inv.paralogisticUC html
is.buggy html
is.crossing html
is.parallel html
is.smart html
is.zero html
kendall.tau html
kumar html
kumarUC html
lakeO html
lambertW html
laplace html
laplaceUC html
latvar html
leipnik html
lerch html
leukemia html
levy html
lgammaUC html
lgammaff html
lindUC html
lindley html
linkfunvlm html
lino html
linoUC html
lirat html
lms.bcg html
lms.bcn html
lms.yjn html
log1mexp html
logF html
logF.UC html
logLikvlm html
logUC html
logclink html
logff html
logistic html
logitlink html
logitoffsetlink html
loglinb2 html
loglinb3 html
loglink html
logloglink html
lognormal html
logofflink html
lomax html
lomaxUC html
lpossums html
lqnorm html
lrt.stat html
lrtest html
lvplot html
lvplot.qrrvglm html
lvplot.rrvglm html
machinists html
makeham html
makehamUC html
margeff html
marital.nz html
maxwell html
maxwellUC html
mccullagh89 html
meangaitd html
melbmaxtemp html
meplot html
micmen html
mills.ratio html
mix2exp html
mix2normal html
mix2poisson html
model.framevlm html
model.matrixqrrvglm html
model.matrixvlm html
moffset html
multilogitlink html
multinomial html
nakagami html
nakagamiUC html
nbcanlink html
negbinomial html
negbinomial.size html
normal.vcm html
notdocumentedyet html
nparamvglm html
olym html
ordpoisson html
ordsup html
oxtemp html
paralogistic html
paralogisticUC html
paretoIV html
paretoIVUC html
paretoff html
perks html
perksUC html
persp.qrrvglm html
pgamma.deriv html
pgamma.deriv.unscaled html
plotdeplot.lmscreg html
plotdgaitd html
plotqrrvglm html
plotqtplot.lmscreg html
plotrcim0 html
plotvgam html
plotvgam.control html
plotvglm html
pneumo html
poisson.points html
poisson.pointsUC html
poissonff html
polonoUC html
posbernUC html
posbernoulli.b html
posbernoulli.t html
posbernoulli.tb html
posbinomial html
posgeomUC html
posnegbinomial html
posnormUC html
posnormal html
pospoisson html
powerlink html
prats html
predictqrrvglm html
predictvglm html
prentice74 html
prinia html
probitlink html
profilevglm html
propodds html
prplot html
put.smart html
qrrvglm.control html
qtplot.gumbel html
qtplot.lmscreg html
qvar html
rayleigh html
rayleighUC html
rcqo html
rdiric html
rec.exp1 html
rec.normal html
reciprocallink html
residualsvglm html
rhobitlink html
riceUC html
riceff html
rigff html
rlplot.gevff html
rootogram4vglm html
round2 html
rrar html
rrvglm-class html
rrvglm html
rrvglm.control html
rrvglm.optim.control html
ruge html
s html
sc.studentt2 html
sc.t2UC html
score.stat html
seglines html
seq2binomial html
setup.smart html
simplex html
simplexUC html
simulate.vlm html
sinmad html
sinmadUC html
skellam html
skellamUC html
skewnormUC html
skewnormal html
slash html
slashUC html
sloglink html
sm.os html
sm.ps html
smart.expression html
smart.mode.is html
smartpred html
specialsvglm html
spikeplot html
sratio html
step4vglm html
studentt html
summarydrrvglm html
summarypvgam html
summaryvgam html
summaryvglm html
tobit html
tobitUC html
topple html
toppleUC html
toxop html
triangleUC html
trim.constraints html
trinormal html
trinormalUC html
trplot html
trplot.qrrvglm html
truncparetoUC html
truncweibull html
ucberk html
undocumented-methods html
uninormal html
vcovvlm html
venice html
vgam-class html
vgam html
vgam.control html
vglm-class html
vglm html
vglm.control html
vglmff-class html
vonmises html
vplot.profile html
vsmooth.spline html
waitakere html
wald.stat html
waldff html
weibull.mean html
weibullR html
weightsvglm html
wine html
wrapup.smart html
yeo.johnson html
yulesimon html
yulesimonUC html
zabinomUC html
zabinomial html
zageomUC html
zageometric html
zanegbinUC html
zanegbinomial html
zapoisUC html
zapoisson html
zero html
zeta html
zetaUC html
zetaff html
zibinomUC html
zibinomial html
zigeomUC html
zigeometric html
zinegbinUC html
zinegbinomial html
zipebcom html
zipf html
zipfUC html
zipfmbUC html
zipoisUC html
zipoisson html
zoabetaR html
zoabetaUC html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (VGAM)